Title

Federated Aggregate Cohort Estimator (FACE): an easy to deploy, vendor neutral, multi-institutional cohort query architecture

UMMS Affiliation

Research Computing Services; Department of Quantitative Health Sciences

Publication Date

2014-12-01

Document Type

Article

Disciplines

Bioinformatics | Databases and Information Systems | Health and Medical Administration | Health Information Technology | Translational Medical Research

Abstract

Cross-institutional data sharing for cohort discovery is critical to enabling future research. While particularly useful in rare diseases, the ability to target enrollment and to determine if an institution has a sufficient number of patients is valuable in all research, particularly in the initiation of projects and collaborations. An optimal technology solution would work with any source database with minimal resource investment for deployment and would meet all necessary security and confidentiality requirements of participating organizations. We describe a platform-neutral reference implementation to meet these requirements: the Federated Aggregate Cohort Estimator (FACE). FACE was developed and implemented through a collaboration of The University of Alabama at Birmingham (UAB), The Ohio State University (OSU), the University of Massachusetts Medical School (UMMS), and the Denver Health and Hospital Authority (DHHA) a clinical affiliate of the Colorado Clinical and Translational Sciences Institute. The reference implementation of FACE federated diverse SQL data sources and an i2b2 instance to estimate combined research subject availability from three institutions. It used easily-deployed virtual machines and addressed privacy and security concerns for data sharing.

Keywords

Cohort discovery, Data sharing, Federated query, Grid architecture, TRIAD, i2b2, UMCCTS funding

DOI of Published Version

10.1016/j.jbi.2013.11.009

Source

J Biomed Inform. 2014 Dec;52:65-71. doi: 10.1016/j.jbi.2013.11.009. Epub 2013 Dec 4. Link to article on publisher's site

Journal/Book/Conference Title

Journal of biomedical informatics

Related Resources

Link to Article in PubMed

PubMed ID

24316052

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