Title
HiTC : Exploration of High-Throughput 'C' experiments
UMMS Affiliation
Program in Systems Biology
Publication Date
2012-11-01
Document Type
Article
Subjects
Chromosome Positioning; Chromosomes; DNA; Genomics; Nucleic Acid Conformation; Genetic Techniques
Disciplines
Bioinformatics | Genetics and Genomics | Systems Biology
Abstract
The R/Bioconductor package HiTC facilitates the exploration of high-throughtput 3C-based data. It allows users to import and export 'C' data, to transform, normalize, annotate and visualize interaction maps. The package operates within the Bioconductor framework, and thus offers new opportunities for future development in this field.Availability and Implementation: The R package HiTC is available from the Bioconductor web site. A detailed vignette provides additional documentation and help for using the package.
DOI of Published Version
10.1093/bioinformatics/bts521
Source
Bioinformatics. 2012 Nov 1;28(21):2843-4. doi: 10.1093/bioinformatics/bts521
Journal/Book/Conference Title
Bioinformatics (Oxford, England)
Related Resources
PubMed ID
22923296
Repository Citation
Servant, Nicolas; Lajoie, Bryan R.; Nora, Elphege P.; Giorgetti, Luca; Chen, Chongjian; Heard, Edith; Dekker, Job; and Barillot, Emmanuel, "HiTC : Exploration of High-Throughput 'C' experiments" (2012). Program in Systems Biology Publications and Presentations. 13.
https://escholarship.umassmed.edu/sysbio_pubs/13