Title
Modulation of HIV protease flexibility by the T80N mutation
UMMS Affiliation
Department of Biochemistry and Molecular Pharmacology
Publication Date
2015-11-01
Document Type
Article
Disciplines
Biochemistry | Medicinal Chemistry and Pharmaceutics | Medicinal-Pharmaceutical Chemistry | Molecular Biology | Structural Biology | Virology
Abstract
The flexibility of HIV protease (HIVp) plays a critical role in enabling enzymatic activity and is required for substrate access to the active site. While the importance of flexibility in the flaps that cover the active site is well known, flexibility in other parts of the enzyme is also critical for function. One key region is a loop containing Thr 80, which forms the walls of the active site. Although not situated within the active site, amino acid Thr80 is absolutely conserved. The mutation T80N preserves the structure of the enzyme but catalytic activity is completely lost. To investigate the potential influence of the T80N mutation on HIVp flexibility, wide-angle X-ray scattering (WAXS) data was measured for a series of HIVp variants. Starting with a calculated WAXS pattern from a rigid atomic model, the modulations in the intensity distribution caused by structural fluctuations in the protein were predicted by simple analytic methods and compared with the experimental data. An analysis of T80N WAXS data shows that this variant is significantly more rigid than the WT across all length scales. The effects of this single point mutation extend throughout the protein, to alter the mobility of amino acids in the enzymatic core. These results support the contentions that significant protein flexibility extends throughout HIVp and is critical to catalytic function.
Keywords
molecular dynamics simulation, protein flexibility, x-ray solution scattering
DOI of Published Version
10.1002/prot.24737
Source
Proteins. 2015 Nov;83(11):1929-39. doi: 10.1002/prot.24737. Epub 2015 Sep 29. Link to article on publisher's site
Journal/Book/Conference Title
Proteins
Related Resources
PubMed ID
25488402
Repository Citation
Zhou, Hao; Li, Shangyang; Badger, John; Nalivaika, Ellen A.; Cai, Yufeng; Foulkes-Murzycki, Jennifer E.; Schiffer, Celia A.; and Makowski, Lee, "Modulation of HIV protease flexibility by the T80N mutation" (2015). Schiffer Lab Publications. 4.
https://escholarship.umassmed.edu/schiffer/4