UMMS Affiliation
Department of Biochemistry and Molecular Pharmacology
Publication Date
5-1-2015
Document Type
Article
Disciplines
Biochemistry | Medicinal Chemistry and Pharmaceutics | Medicinal-Pharmaceutical Chemistry | Molecular Biology | Structural Biology
Abstract
High-throughput crystallographic approaches require integrated software solutions to minimize the need for manual effort. REdiii is a system that allows fully automated crystallographic structure solution by integrating existing crystallographic software into an adaptive and partly autonomous workflow engine. The program can be initiated after collecting the first frame of diffraction data and is able to perform processing, molecular-replacement phasing, chain tracing, ligand fitting and refinement without further user intervention. Preset values for each software component allow efficient progress with high-quality data and known parameters. The adaptive workflow engine can determine whether some parameters require modifications and choose alternative software strategies in case the preconfigured solution is inadequate. This integrated pipeline is targeted at providing a comprehensive and efficient approach to screening for ligand-bound co-crystal structures while minimizing repetitiveness and allowing a high-throughput scientific discovery process.
Keywords
REdiii, automated structure solution
Rights and Permissions
Publisher PDF posted as allowed by the publisher's author rights policy at http://journals.iucr.org/services/authorrights.html
DOI of Published Version
10.1107/S139900471500303X
Source
Acta Crystallogr D Biol Crystallogr. 2015 May;71(Pt 5):1059-67. doi: 10.1107/S139900471500303X. Epub 2015 Apr 24. Link to article on publisher's site
Journal/Book/Conference Title
Acta crystallographica. Section D, Biological crystallography
Related Resources
PubMed ID
25945571
Repository Citation
Bohn, Markus-Frederik and Schiffer, Celia A., "REdiii: a pipeline for automated structure solution" (2015). Schiffer Lab Publications. 10.
https://escholarship.umassmed.edu/schiffer/10
Included in
Biochemistry Commons, Medicinal Chemistry and Pharmaceutics Commons, Medicinal-Pharmaceutical Chemistry Commons, Molecular Biology Commons, Structural Biology Commons