RNA Therapeutics Institute Publications

 
The RNA Therapeutics Institute (RTI) at the University of Massachusetts Medical School was founded in 2009 and became an academic department in 2016, chaired by Phillip D. Zamore, Ph.D. The RTI is dedicated to leveraging the strong RNA biology and clinical research communities at UMMS to develop novel therapies for which RNA is the therapeutic target or modality. The RNA Therapeutics Institute faculty are recognized as scientific trailblazers, and include a Nobel Laureate, a Gairdner Prize recipient, the 2018 RNA Society early and mid-career award recipients, and two Howard Hughes Medical Institute Investigators. This collection showcases journal articles and other publications authored by RTI faculty and researchers.

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Publications from 2017

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A Wnt-producing niche drives proliferative potential and progression in lung adenocarcinoma, Tuomas Tammela, Wen Xue, and Tyler Jacks

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Diatrack particle tracking software: Review of applications and performance evaluation, Pascal Vallotton, Antoine M. van Oijen, Cynthia B. Whitchurch, Vladimir Gelfand, Leslie Yeo, Georgios Tsiavaliaris, Stephanie Heinrich, Elisa Dultz, Karsten Weis, and David Grünwald

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Structure-guided chemical modification of guide RNA enables potent non-viral in vivo genome editing, Hao Yin, Chun-Qing Song, Esther Mintzer, Mehmet F. Bolukbasi, Lihua Julie Zhu, Haiwei Mou, Suet-Yan Kwan, Scot A. Wolfe, Wen Xue, and Daniel G. Anderson

Publications from 2016

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Ensemble cryo-EM uncovers inchworm-like translocation of a viral IRES through the ribosome, Priyanka D. Abeyrathne, Cha San Koh, Timothy Grant, Nikolaus Grigorieff, and Andrei A. Korostelev

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A Modular Assembly Platform for Rapid Generation of DNA Constructs, Elliot Akama-Garren, Nik Joshi, Tuomas Tammela, Gregory P. Chang, Bethany L. Wagner, Da-Yae Lee, William M. Rideout Iii, Thales Papagiannakopoulos, Wen Xue, and Tyler Jacks

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Single Molecule Visualization of the DEAH-Box ARPase Prp22 Interacting with the Spliceosome: A Dissertation, Eric G. Anderson

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A widely employed germ cell marker is an ancient disordered protein with reproductive functions in diverse eukaryotes, Michelle A. Carmell, Gregoriy A. Dokshin, Helen Skaletsky, Yueh-Chiang Hu, Josien C. van Wolfswinkel, Kyomi J. Igarashi, Daniel W. Bellott, Michael Nefedov, Peter W. Reddien, George C. Enders, Vladimir N. Uversky, Craig C. Mello, and David C. Page

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A Common Class of Transcripts with 5'-Intron Depletion, Distinct Early Coding Sequence Features, and N1-Methyladenosine Modification [preprint], Can Cenik, Hon Nian Chua, Guramrit Singh, Abdalla Akef, Michael P. Snyder, Alexander F. Palazzo, Melissa J. Moore, and Frederick P. Roth

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HIV-1 RNA genome dimerizes on the plasma membrane in the presence of Gag protein, Jianbo Chen, Sheikh Abdul Rahman, Olga A. Nikolaitchik, David Grünwald, Luca Sardo, Ryan C. Burdick, Sergey Plisov, Edward Liang, Sheldon Tai, Vinay K. Pathak, and Wei-Shau Hu

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Widespread Central Nervous System Gene Transfer and Silencing After Systemic Delivery of Novel AAV-AS Vector, Sourav Roy Choudhury, Anne F. Harris, Damien J. Cabral, Allison M. Keeler, Jennifer Ferreira, Qin Su, Lorelei Stoica, Neil Aronin, Guangping Gao, and Miguel Sena-Esteves

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Exosome-mediated Delivery of Hydrophobically Modified siRNA for Huntingtin mRNA Silencing, Marie C. Didiot, Lauren M. Hall, Andrew H. Coles, Reka A. Haraszti, Bruno M. D. C. Godinho, Kathryn O. Chase, Socheata Ly, Julia F. Alterman, Matthew R. Hassler, Dimas Echeverria, Neil Aronin, and Anastasia Khvorova

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Rapid Screening for CRISPR-Directed Editing of the Drosophila Genome Using white Coconversion, Daniel Tianfang Ge, Cindy Tipping, Michael H. Brodsky, and Phillip D. Zamore

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The RNA-binding protein ATX-2 regulates cytokinesis through PAR-5 and ZEN-4, Megan M. Gnazzo, Eva-Maria E. Uhlemann, Alex R. Villarreal, Masaki Shirayama, Eddie G. Dominguez, and Ahna R. Skop

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High-resolution proteomic and lipidomic analysis of exosomes and microvesicles from different cell sources, Reka A. Haraszti, Marie-Cecile Didiot, Ellen Sapp, John D. Leszyk, Scott A. Shaffer, Hannah E. Rockwell, Fei Gao, Niven R. Narain, Marian DiFiglia, Michael A. Kiebish, Neil Aronin, and Anastasia Khvorova

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Redefining the Translational Status of 80S Monosomes, Erin E. Heyer and Melissa J. Moore

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GW182-Free microRNA Silencing Complex Controls Post-transcriptional Gene Expression during Caenorhabditis elegans Embryogenesis, Guillaume Jannot, Pascale Michaud, Miguel Quevillon Huberdeau, Louis Morel-Berryman, James A. Brackbill, Sandra Piquet, Katherine McJunkin, Kotaro Nakanishi, and Martin J. Simard

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NEAT1 is Required for Survival of Breast Cancer Cells Through FUS and miR-548, Hao Ke, Limin Zhao, Xu Feng, Haibo Xu, Li Zou, Qin Yang, Xiaosan Su, Lingtao Peng, and Baowei Jiao

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Does the Mutant CAG Expansion in Huntingtin mRNA Interfere with Exonucleolytic Cleavage of its First Exon, Wanzhao Liu, Edith L. Pfister, Lori A. Kennington, Kathryn O. Chase, Christian Mueller, Marian DiFiglia, and Neil Aronin

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Ribosome*RelA structures reveal the mechanism of stringent response activation, Anna B. Loveland, Eugene Bah, Rohini Madireddy, Ying Zhang, Axel F. Brilot, Nikolaus Grigorieff, and Andrei A. Korostelev

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CRISPR-Cas9 nuclear dynamics and target recognition in living cells, Hanhui Ma, Li-Chun Tu, Ardalan Naseri, Maximiliaan Huisman, Shaojie Zhang, David Grünwald, and Thoru Pederson

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Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow, Hanhui Ma, Li-Chun Tu, Ardalan Naseri, Maximiliaan Huisman, Shaojie Zhang, David Grünwald, and Thoru Pederson

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Deciphering the Structure and Function of Nuclear Pores Using Single-Molecule Fluorescence Approaches, Siegfried M. Musser and David Grunwald

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Docosahexaenoic Acid Conjugation Enhances Distribution and Safety of siRNA upon Local Administration in Mouse Brain, Mehran Nikan, Maire F. Osborn, Andrew H. Coles, Bruno M. D. C. Godinho, Lauren M. Hall, Reka A. Haraszti, Dimas Echeverria, Neil Aronin, Matthew R. Hassler, and Anastasia Khvorova

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Mycobacterium tuberculosis induces the miR-33 locus to reprogram autophagy and host lipid metabolism, Mireille Ouimet, Katharine Cecchini, Philip D. Zamore, and Kathryn J. Moore

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Naturally Occurring Off-Switches for CRISPR-Cas9, April Pawluk, Nadia Amrani, Yan Zhang, Bianca Garcia, Yurima Hidalgo-Reyes, Jooyoung Lee, Alireza Edraki, Megha Shah, Erik J. Sontheimer, Karen L. Maxwell, and Alan R. Davidson

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Staufen Negatively Modulates microRNA Activity in Caenorhabditis elegans, Zhiji Ren, Isana Veksler-Lublinsky, David Morrissey, and Victor R. Ambros

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Functions of Argonaute Proteins in Self Versus Non-Self Recognition in the C. elegans Germline: A Dissertation, Meetu Seth

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Genomic Amplifications Cause False Positives in CRISPR Screens, Ankur Sheel and Wen Xue

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Structural Basis for Translation Termination on a Pseudouridylated Stop Codon, Egor Svidritskiy, Rohini Madireddy, and Andrei A. Korostelev

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The RNase PARN-1 Trims piRNA 3' Ends to Promote Transcriptome Surveillance in C. elegans, Wen Tang, Shikui Tu, Heng-Chi Lee, Zhiping Weng, and Craig C. Mello

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MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory, Alex Tek, Andrei A. Korostelev, and Samuel Coulbourn Flores

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RNAi-nanoparticulate manipulation of gene expression as a new functional genomics tool in the liver, Hao Yin, Roman L. Bogorad, Carmen Barnes, Stephen Walsh, Iris Zhuang, Hidenori Nonaka, Vera Ruda, Satya Kuchimanchi, Lubomir Nechev, Akin Akinc, Wen Xue, Marino Zerial, Robert Langer, Daniel G. Anderson, and Victor Koteliansky

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Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo, Hao Yin, Chun-Qing Song, Joseph R. Dorkin, Lihua Julie Zhu, Yingxiang Li, Qiongqiong Wu, Angela I. Park, Junghoon Yang, Sneha Suresh, Aizhan Bizhanova, Ankit Gupta, Mehmet Fatih Bolukbasi, Stephen Walsh, Roman L. Bogorad, Guangping Gao, Zhiping Weng, Yizhou Dong, Victor Koteliansky, Scot A. Wolfe, Robert Langer, Wen Xue, and Daniel G. Anderson

Publications from 2015

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Hydrophobically Modified siRNAs Silence Huntingtin mRNA in Primary Neurons and Mouse Brain, Julia F. Alterman, Lauren M. Hall, Andrew H. Coles, Matthew R. Hassler, Marie C. Didiot, Kathryn O. Chase, Jasmin Abraham, Emily Sottosanti, Emily S. Johnson, Ellen Sapp, Maire F. Osborn, Marian Difiglia, Neil Aronin, and Anastasia Khvorova

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Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans, Can Cenik, Elif Sarinay Cenik, Gun W. Byeon, Fabian Grubert, Sophie I. Candille, Damek Spacek, Bilal Alsallakh, Hagen Tilgner, Carlos L. Araya, Hua Tang, Emiliano P. Ricci, and Michael P. Snyder

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Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans [preprint], Can Cenik, Elif Sarinay Cenik, Gun W. Byeon, Fabian Grubert, Sophie I. Candille, Damek Spacek, Bilal Alsallakh, Hagen Tilgner, Carlos L. Araya, Hua Tang, Emiliano P. Ricci, and Michael P. Snyder

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Tailor: a computational framework for detecting non-templated tailing of small silencing RNAs, Min-Te Chou, Bo W. Han, Chiung-Po Hsiao, Phillip D. Zamore, Zhiping Weng, and Jui-Hung Hung

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RNA Interference in Caenorhabditis elegans, Darryl Conte Jr., Lesley T. MacNeil, Albertha J. M. Walhout, and Craig C. Mello (Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.], 2015-01-05)

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POS-1 Promotes Endo-mesoderm Development by Inhibiting the Cytoplasmic Polyadenylation of neg-1 mRNA, Ahmed M. Elewa, Masaki Shirayama, Ebru Kaymak, Paul F. Harrison, David R. Powell, Zhuo Du, Christopher D. Chute, Hannah Woolf, Dongni Yi, Takao Ishidate, Jagan Srinivasan, Zhirong Bao, Traude H. Beilharz, Sean P. Ryder, and Craig C. Mello

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RNA interference-mediated antiviral defense in insects, Don B. Gammon and Craig C. Mello

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Influenza A virus preferentially snatches noncoding RNA caps, Weifeng Gu, Glen R. Gallagher, Weiwei Dai, Ping Liu, Ruidong Li, Melanie I. Trombly, Don B. Gammon, Craig C. Mello, Jennifer P. Wang, and Robert W. Finberg

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Using Experimental and Computational Strategies to Understand the Biogenesis of microRNAs and piRNAs: A Dissertation, Bo W. Han

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Noncoding RNA. piRNA-guided transposon cleavage initiates Zucchini-dependent, phased piRNA production, Bo W. Han, Wei Wang, Chengjian Li, Zhiping Weng, and Phillip D. Zamore

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piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing, Bo W. Han, Wei Wang, Phillip D. Zamore, and Zhiping Weng

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Control of stem cell self-renewal and differentiation by the heterochronic genes and the cellular asymmetry machinery in Caenorhabditis elegans, Omid F. Harandi and Victor R. Ambros

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Optimizing RNA Library Preparation to Redefine the Translational Status of 80S Monosomes: A Dissertation, Erin E. Heyer

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An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments, Erin E. Heyer, Hakan Ozadam, Emiliano P. Ricci, Can Cenik, and Melissa J. Moore

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Safety of Striatal Infusion of siRNA in a Transgenic Huntington's Disease Mouse Model, Emily S. Johnson, Kathryn O. Chase, Sarah McGowan, Erica Mondo, Edith L. Pfister, Eric Mick, Randall H. Friedline, Jason K. Kim, Ellen Sapp, Marian DiFiglia, and Neil Aronin

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A versatile reporter system for CRISPR-mediated chromosomal rearrangements, Yingxiang Li, Angela I. Park, Haiwei Mou, Cansu Colpan, Aizhan Bizhanova, Elliot Akama-Garren, Nik Joshi, Eric A. Hendrickson, David Feldser, Hao Yin, Daniel G. Anderson, Tyler Jacks, Zhiping Weng, and Wen Xue

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Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified, Georgi K. Marinov, Jie Wang, Dominik Handler, Barbara J. Wold, Zhiping Weng, Gregory J. Hannon, Alexei A. Aravin, Phillip D. Zamore, Julius Brennecke, and Katalin Fejes Toth

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Precision cancer mouse models through genome editing with CRISPR-Cas9, Haiwei Mou, Zachary Kennedy, Daniel G. Anderson, Hao Yin, and Wen Xue

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Guanabenz (Wytensin) selectively enhances uptake and efficacy of hydrophobically modified siRNAs, Maire F. Osborn, Julia F. Alterman, Mehran Nikan, Hong Cao, Marie C. Didiot, Matthew R. Hassler, Andrew H. Coles, and Anastasia Khvorova

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Caenorhabditis elegans microRNAs of the let-7 family act in innate immune response circuits and confer robust developmental timing against pathogen stress, Zhiji Ren and Victor R. Ambros

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Assessing long-distance RNA sequence connectivity via RNA-templated DNA-DNA ligation, Christian K. Roy, Sara Olson, Brenton R. Graveley, Phillip D. Zamore, and Melissa J. Moore

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Single-Molecule Imaging Reveals that Argonaute Re-Shapes the Properties of its Nucleic Acid Guides: A Dissertation, William E. Salomon

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Single-Molecule Imaging Reveals that Argonaute Reshapes the Binding Properties of Its Nucleic Acid Guides, William E. Salomon, Samson M. Jolly, Melissa J. Moore, Phillip D. Zamore, and Victor Serebrov

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In vivo single-particle imaging of nuclear mRNA export in budding yeast demonstrates an essential role for Mex67p, Carlas Smith, Azra Lari, Carina Patrizia. Derrer, Anette Ouwehand, Ammeret Rossouw, Maximiliaan Huisman, Thomas Dange, Mark Hopman, Aviva Joseph, Daniel Zenklusen, Karsten Weis, David Grünwald, and Ben Montpetit

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Nuclear accessibility of beta-actin mRNA is measured by 3D single-molecule real-time tracking, Carlas Smith, Stephan Preibisch, Aviva Joseph, Sara Abrahamsson, Bernd Rieger, Eugene Myers, Robert H. Singer, and David Grünwald

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Probability-based particle detection that enables threshold-free and robust in vivo single-molecule tracking, Carlas Smith, Sjoerd Stallinga, Keith A. Lidke, Bernd Rieger, and David Grunwald

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A 4D view on mRNA, Carlas Smith, Li-Chun Tu, and David Grünwald

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Accelerating expansion, Erik J. Sontheimer

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An efficient and sensitive method for preparing cDNA libraries from scarce biological samples, Catherine H. Sterling, Isana Veksler-Lublinsky, and Victor R. Ambros

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Ribosome Structure Reveals Preservation of Active Sites in the Presence of a P-Site Wobble Mismatch, Egor Svidritskiy and Andrei A. Korostelev

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A ribonuclease coordinates siRNA amplification and mRNA cleavage during RNAi, Hsin-Yue Tsai, Chun-Chieh G. Chen, Darryl Conte Jr., James J. Moresco, Daniel A. Chaves, Shohei Mitani, John R. Yates 3rd, Ming-Daw Tsai, and Craig C. Mello

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Adenovirus-Mediated Somatic Genome Editing of Pten by CRISPR/Cas9 in Mouse Liver in Spite of Cas9-Specific Immune Responses, Dan Wang, Haiwei Mou, Shaoyong Li, Yingxiang Li, Soren Hough, Karen Tran, Jia Li, Hao Yin, Daniel G. Anderson, Erik J. Sontheimer, Zhiping Weng, Guangping Gao, and Wen Xue

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Unveiling Molecular Mechanisms of piRNA Pathway from Small Signals in Big Data: A Dissertation, Wei Wang

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Slicing and Binding by Ago3 or Aub Trigger Piwi-Bound piRNA Production by Distinct Mechanisms, Wei Wang, Bo W. Han, Cindy Tipping, Daniel Tianfang Ge, Zhao Zhang, Zhiping Weng, and Phillip D. Zamore

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DNase H Activity of Neisseria meningitidis Cas9, Yan Zhang, Rakhi Rajan, H. Steven Seifert, Alfonso Mondragon, and Erik J. Sontheimer

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Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal, Anna Y. Zinovyeva, Isana Veksler-Lublinsky, Ajay A. Vashisht, James A. Wohlschlegel, and Victor R. Ambros

Publications from 2014

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Transcriptional regulation of Caenorhabditis elegans FOXO/DAF-16 modulates lifespan, Ankita Bansal, Eun-Soo Kwon, Darryl Conte Jr., Haibo Liu, Michael J. Gilchrist, Lesley T. MacNeil, and Heidi A. Tissenbaum

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Competitive endogenous RNAs cannot alter microRNA function in vivo, Jennifer A. Broderick and Phillip D. Zamore

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Cytoplasmic HIV-1 RNA is mainly transported by diffusion in the presence or absence of Gag protein, Jianbo Chen, David Grünwald, Luca Sardo, Andrea Galli, Sergey Plisov, Olga A Nikolaitchik, De Chen, Stephen Lockett, Daniel R. Larson, Vinay K. Pathak, and Wei-Shau Hu

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Small RNAs and Argonautes Provide a Paternal Epigenetic Memory of Germline Gene Expression to Promote Thermotolerant Male Fertility: A Dissertation, Colin C. Conine

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POS-1 Regulation of Endo-mesoderm Identity in C. elegans: A Dissertation, Ahmed M. Elewa

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A single vertebrate DNA virus protein disarms invertebrate immunity to RNA virus infection, Don B. Gammon, Sophie Duraffour, Daniel K. Rozelle, Heidi Hehnly, Rita Sharma, Michael E. Sparks, Cara C. West, Ying Chen, James J. Moresco, Graciela Andrei, John H. Connor, Darryl Conte Jr., Dawn E. Gundersen-Rindal, William L. Marshall, John R. Yates, Neal S. Silverman, and Craig C. Mello

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piRNAs, Bo W. Han and Phillip D. Zamore

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Divide and differentiate: CDK/Cyclins and the art of development, Takao Ishidate, Ahmed M. Elewa, Soyoung Kim, Craig C. Mello, and Masaki Shirayama

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A co-CRISPR strategy for efficient genome editing in Caenorhabditis elegans, Heesun Kim, Takao Ishidate, Krishna S. Ghanta, Meetu Seth, Darryl Conte Jr., Masaki Shirayama, and Craig C. Mello

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Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center, Cha San Koh, Axel F. Brilot, Nikolaus Grigorieff, and Andrei A. Korostelev

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A deeper look into translation initiation, Andrei A. Korostelev

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The embryonic mir-35 family of microRNAs promotes multiple aspects of fecundity in Caenorhabditis elegans, Katherine McJunkin and Victor R. Ambros

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Cnidarian microRNAs frequently regulate targets by cleavage, Yehu Moran, David Fredman, Daniela Praher, Xin Zhiguo Li, Liang Meng Wee, Fabian Rentzsch, Phillip D. Zamore, Ulrich Technau, and Herve Seitz

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Putting the Pieces Together: Exons and piRNAs: A Dissertation, Christian K. Roy

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RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes, Guramrit Singh, Emiliano P. Ricci, and Melissa J. Moore

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Structures of yeast 80S ribosome-tRNA complexes in the rotated and nonrotated conformations, Egor Svidritskiy, Axel F. Brilot, Cha San Koh, Nikolaus Grigorieff, and Andrei A. Korostelev

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The initial uridine of primary piRNAs does not create the tenth adenine that Is the hallmark of secondary piRNAs, Wei Wang, Mayu Yoshikawa, Bo W. Han, Natsuko Izumi, Yukihide Tomari, Zhiping Weng, and Phillip D. Zamore

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Circulating microRNA profiles in human patients with acetaminophen hepatotoxicity or ischemic hepatitis, Jeanine Ward, Chitra Kanchagar, Isana Veksler-Lublinsky, Rosalind C. Lee, Mitchell R. McGill, Hartmut Jaeschke, Steven C. Curry, and Victor R. Ambros

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The HP1 homolog rhino anchors a nuclear complex that suppresses piRNA precursor splicing, Zhao Zhang, Jie Wang, Nadine McGinnis-Schultz, Fan Zhang, Swapnil S. Parhad, Shikui Tu, Thom Vreven, Phillip D. Zamore, Zhiping Weng, and William E. Theurkauf

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CRISPRseek: A Bioconductor Package to Identify Target-Specific Guide RNAs for CRISPR-Cas9 Genome-Editing Systems, Lihua Julie Zhu, Benjamin R. Holmes, Neil Aronin, and Michael H. Brodsky

Publications from 2013

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Argonautes Promote Male Fertility and Provide a Paternal Memory of Germline Gene Expression in C. elegans, Colin C. Conine, James J. Moresco, Weifeng Gu, Masaki Shirayama, Darryl Conte Jr., John R. Yates III, and Craig C. Mello

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Small RNA-Directed Silencing: The Fly Finds Its Inner Fission Yeast, Daniel Tianfang Ge and Phillip D. Zamore

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Inductive asymmetric cell division: The WRM leads the way, Takao Ishidate, Soyoung Kim, Craig C. Mello, and Masaki Shirayama

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Measuring image resolution in optical nanoscopy, Robert P. J. Nieuwenhuizen, Keith A. Lidke, Mark Bates, Daniela Leyton Puig, David Grunwald, Sjoerd Stallinga, and Bernd Rieger

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Passively transferred human NMO-IgG exacerbates demyelination in mouse experimental autoimmune encephalomyelitis, Harleen Saini, Robert Rifkin, Michael Gorelik, Hwa Huang, Zachary Ferguson, Melina V. Jones, and Michael Levy

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Blasticidin S inhibits translation by trapping deformed tRNA on the ribosome, Egor Svidritskiy, Clarence Ling, Dmitri N. Ermolenko, and Andrei A. Korostelev

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RNA Interference by the Numbers: Explaining Biology Through Enzymology: A Dissertation, Liang Meng Wee

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piRNA Biogenesis and Transposon Silencing in Drosophila: A Dissertation, Zhao Zhang

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Developmental decline in neuronal regeneration by the progressive change of two intrinsic timers, Yan Zou, Hui Chiu, Anna Y. Zinovyeva, Victor R. Ambros, Chiou-Fen Chuang, and Chieh Chang

Publications from 2012

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Understanding Small RNA Formation in Drosophila Melanogaster: A Dissertation, Elif Sarinay Cenik

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Characterization of New Factors in the 18S Nonfunctional Ribosomal RNA Decay Pathway in S. cerevisiae: A Dissertation, Christopher N. Merrikh