The Department of Pathology at the University of Massachusetts Medical School is committed to excellence in the three areas that comprise its mission: the practice of anatomic and clinical pathology diagnosis and consultation for a large academic medical center and its community affiliates; the advancement of knowledge through basic and clinical research and the translation of advances from the laboratory to clinical practice; the training of medical and graduate students, clinical and research fellows, and pathology residents. This collection showcases the the journal articles, books, book chapters, and other publications and presentations written by faculty and researchers of the Department of Pathology.

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Publications from 2008

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Listening to the New Student Voice: How They Learn, Stacey J. Kadish, Gina M. Gentile, Susan V. Barrett, Mary L. Zanetti, Thomas W. Smith, and Michele P. Pugnaire

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Viral pathogenesis, modulation of immune receptor signaling and treatment., Walter Minsub Kim and Alexander B. Sigalov

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A functional Notch-survivin gene signature in basal breast cancer, Connie Wing-Ching Lee, Karl Simin, Qin Liu, Janet Plescia, Minakshi Guha, Ashraf Khan, Chung-Cheng Hsieh, and Dario C. Altieri

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Interleukin 18 binding protein (IL18-BP) inhibits neointimal hyperplasia after balloon injury in an atherosclerotic rabbit model, Jian-ming Li, Mohammad H. Eslami, Michael J. Rohrer, Phong Dargon, Isabelle Joris, Gregory M. Hendricks, Stephen P. Baker, and Bruce S. Cutler

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Immune system derived from homeostatic proliferation generates normal CD8 T-cell memory but altered repertoires and diminished heterologous immune responses, Sue-Jane Lin, Alex T. Chen, and Raymond M. Welsh

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Idd loci synergize to prolong islet allograft survival induced by costimulation blockade in NOD mice, Julie A. Mangada, Todd Pearson, Michael A. Brehm, Linda S. Wicker, Laurence B. Peterson, Leonard D. Shultz, David V. Serreze, Aldo A. Rossini, and Dale L. Greiner

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TLR agonists abrogate co-stimulation blockade-induced mixed chimerism and transplantation tolerance., David M. Miller, Thomas B. Thornley, Todd Pearson, Masahiro Yamazaki, Michael A. Brehm, Aldo A. Rossini, and Dale L. Greiner

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Evolution of a TRIM5-CypA splice isoform in old world monkeys, Ruchi M. Newman, Laura Hall, Andrea Kirmaier, Lu-Ann M. Pozzi, Erez Pery, Michael Farzan, Shawn P. O'Neil, and Welkin E. Johnson

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Role of TNF in Heterologous Immunity between Lymphocytic Choriomeningitis Virus and Vaccinia Virus: A Dissertation, Siwei Nie

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Model for the peptide-free conformation of class II MHC proteins, Corrie A. Painter, Anthony Cruz, Gustavo E. Lopez, Lawrence J. Stern, and Zarixia Zavala-Ruiz

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Vesicular stomatitis virus matrix protein impairs CD1d-mediated antigen presentation through activation of the p38 MAPK pathway, Gourapura J. Renukaradhya, Masood A. Khan, Daniel Shaji, and Randy R. Brutkiewicz

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Type I NKT cells protect (and type II NKT cells suppress) the host's innate antitumor immune response to a B-cell lymphoma, Gourapura J. Renukaradhya, Masood A. Khan, Marcus A. L. Vieira, Wenjun Du, Jacquelyn Gervay-Hague, and Randy R. Brutkiewicz

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The Role of Janus-Kinase-3 in CD4+ T Cell Proliferation and Differentiation: A Dissertation, Min Shi

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Janus-kinase-3-dependent signals induce chromatin remodeling at the Ifng locus during T helper 1 cell differentiation, Min Shi, Tsung H. Lin, Kenneth C. Appell, and Leslie J. Berg

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The intrinsically disordered cytoplasmic domain of the T cell receptor zeta chain binds to the nef protein of simian immunodeficiency virus without a disorder-to-order transition., Alexander B. Sigalov, Walter Minsub Kim, Maria Saline, and Lawrence J. Stern

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Ammonia and carbon dioxide concentrations in disposable and reusable static mouse cages, Jerald Silverman, David W. Bays, and Stephen P. Baker

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IMP3 predicts aggressive superficial urothelial carcinoma of the bladder, Lioudmila Sitnikova, Gary Wayne Mendese, Qin Liu, Bruce A. Woda, Di Lu, Karen A. Dresser, Sambit Mohanty, Kenneth L. Rock, and Zhong Jiang

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The surprising discovery that TGF beta specifically induces the IgA class switch, Janet Stavnezer and Joonsoo Kang

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Vaccinia peptides eluted from HLA-DR1 isolated from virus-infected cells are recognized by CD4+ T cells from a vaccinated donor, Iwona Strug, J. Mauricio Calvo-Calle, Karin M. Green, John Cruz, Francis A. Ennis, James E. Evans, and Lawrence J. Stern

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Diagnostic challenges related to myeloid/natural killer cells, a variant of myeloblasts, Guilin Tang, Franciose Truong, Oluwole Fadare, Bruce A. Woda, and Sa A. Wang

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Puromycin-sensitive aminopeptidase limits MHC class I presentation in dendritic cells but does not affect CD8 T cell responses during viral infections, Charles Fenton Towne, Ian A. York, Joost J. Neijssen, Margaret L. Karow, Andrew J. Murphy, David M. Valenzuela, George D. Yancopoulos, Jacques J. Neefjes, and Kenneth L. Rock

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Class II major histocompatibility complex tetramer staining: progress, problems, and prospects, Sabrina S. Vollers and Lawrence J. Stern

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Lymphocytic choriomeningitis virus (LCMV): propagation, quantitation, and storage, Raymond M. Welsh and Mina O. Seedhom

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A DNA vaccine prime followed by a liposome-encapsulated protein boost confers enhanced mucosal immune responses and protection, Kejian Yang, Barbara J. Whalen, Rebecca S Tirabassi, Liisa K. Selin, Tatyana S. Levchenko, Vladimir P. Torchilin, Edward H. Kislauskis, and Dennis L. Guberski

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Tissue-specific reduction in DC-SIGN expression correlates with progression of pathogenic simian immunodeficiency virus infection, Jennifer Holmes Yearley, Sarah Kanagy, Daniel C. Anderson, Karen Dalecki, Douglas R. Pauley, Carolyn Suwyn, Robert M. Donahoe, Harold M. McClure, and Shawn P. O'Neil

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Lessons from Mycobacterium avium complex-associated pneumonitis: a case report, Victor Zota, Sheryn M. Angelis, Armando E. Fraire, Ciaran McNamee, Shasta Kielbasa, and Daniel H. Libraty

Publications from 2007

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Human CD4+ T cell epitopes from vaccinia virus induced by vaccination or infection, J. Mauricio Calvo-Calle, Iwona Strug, Maria-Dorothea Nastke, Stephen P. Baker, and Lawrence J. Stern

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Three is better than one: pre-ligand receptor assembly in the regulation of TNF receptor signaling, Francis Ka-Ming Chan

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MSH-6: extending the reliability of immunohistochemistry as a screening tool in Muir-Torre syndrome, Vishes Chhibber, Karen A. Dresser, and Meera Mahalingam

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Deletion of p37Ing1 in mice reveals a p53-independent role for Ing1 in the suppression of cell proliferation, apoptosis, and tumorigenesis, Andrew H. Coles, Huiling Liang, Zhiqing Zhu, Concetta G. A. Marfella, Joonsoo Kang, Anthony N. Imbalzano, and Stephen N. Jones

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Tec kinases in T cell and mast cell signaling, Martin Felices, Markus Falk, Yoko Kosaka, and Leslie J. Berg

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MyD88 is required for the formation of long-term humoral immunity to virus infection, Heath M. Guay, Tatyana A. Andreyeva, Robert L. Garcea, Raymond M. Welsh, and Eva Szomolanyi-Tsuda

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The Role of CD40 in Naïve and Memory CD8+ T Cell Responses: a Dissertation, Maria Genevieve H. Hernandez

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CD40-CD40 ligand interaction between dendritic cells and CD8+ T cells is needed to stimulate maximal T cell responses in the absence of CD4+ T cell help, Maria Genevieve H. Hernandez, Lianjun Shen, and Kenneth L. Rock

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Microcystic adnexal carcinoma: an immunohistochemical reappraisal, Mai P. Hoang, Karen A. Dresser, Payal Kapur, Whitney A. High, and Meera Mahalingam

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Normal variation in intraepithelial lymphocytes of the terminal ileum, Smiljana Istvanic, Rhonda K. Yantiss, Stephen P. Baker, and Barbara F. Banner

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A new Hu-PBL model for the study of human islet alloreactivity based on NOD-scid mice bearing a targeted mutation in the IL-2 receptor gamma chain gene, Marie A. King, Todd Pearson, Leonard D. Shultz, Jean H. Leif, Rita Bottino, Massimo Trucco, Mark A. Atkinson, Clive Wasserfall, Kevan C. Herold, Robert T. Woodland, Madelyn R. Schmidt, Bruce A. Woda, Michael J. Thompson, Aldo A. Rossini, and Dale L. Greiner

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Noncanonical Wnt signaling promotes apoptosis in thymocyte development, Huiling Liang, Andrew H. Coles, Zhiqing Zhu, Jennifer Zayas, Roland Jurecic, Joonsoo Kang, and Stephen N. Jones

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Programmed death-1 (PD-1) defines a transient and dysfunctional oligoclonal T cell population in acute homeostatic proliferation, Sue-Jane Lin, Craig D. Peacock, Kapil Bahl, and Raymond M. Welsh

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Programmed death-1 (PD-1) defines a transient and dysfunctional oligoclonal T cell population in acute homeostatic proliferation, Sue-Jane Lin, Craig D. Peacock, Kapil Bahl, and Raymond M. Welsh

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Apolipoprotein D in CD34-positive and CD34-negative cutaneous neoplasms: a useful marker in differentiating superficial acral fibromyxoma from dermatofibrosarcoma protuberans, Mikhail Lisovsky, Mai P. Hoang, Karen A. Dresser, Payal Kapur, Jag Bhawan, and Meera Mahalingam

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BMP-5 expression increases during chondrocyte differentiation in vivo and in vitro and promotes proliferation and cartilage matrix synthesis in primary chondrocyte cultures, Genevieve Mailhot, Meilheng Yang, April Mason-Savas, Carole A. MacKay, Irwin Leav, and Paul R. Odgren

Expression of Vascular Endothelial Growth Factor Subtypes in Mammary Invasive Ductal Carcinoma and their Relationship to Tumor Progression, Katherine F. Maloney

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Integrated morphogen signal inputs in gammadelta versus alphabeta T-cell differentiation, Heather J. Melichar and Joonsoo Kang

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Regulation of gammadelta versus alphabeta T lymphocyte differentiation by the transcription factor SOX13, Heather J. Melichar, Kavitha Narayan, Sandy D. Der, Yoshiki Hiraoka, Noemie Gardiol, Gregoire Jeannet, Werner Held, Cynthia A. Chambers, and Joonsoo Kang

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Molecular events that regulate alphabeta versus gammadelta T cell lineage commitment: old suspects, new players and different game plans, Kavitha Narayan and Joonsoo Kang

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Bioactive food components that enhance gammadelta T cell function may play a role in cancer prevention, Susan S. Percival, Jack F. Bukowski, and John A. Milner

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Type 1 IFN mediates cross-talk between innate and adaptive immunity that abrogates transplantation tolerance, Thomas B. Thornley, Nancy E. Phillips, Britte C. Beaudette-Zlatanova, Thomas G. Markees, Kapil Bahl, Michael A. Brehm, Leonard D. Shultz, Evelyn A. Kurt-Jones, John P. Mordes, Raymond M. Welsh, Aldo A. Rossini, and Dale L. Greiner

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Analysis of the role of bleomycin hydrolase in antigen presentation and the generation of CD8 T cell responses, Charles Fenton Towne, Ian A. York, Levi B. Watkin, John S. Lazo, and Kenneth L. Rock

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Fluorogenic probes for monitoring peptide binding to class II MHC proteins in living cells, Prasanna Venkatraman, Tina T. Nguyen, Matthieu Sainlos, Osman Bilsel, Sriram Chitta, Barbara Imperiali, and Lawrence J. Stern

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Quantitative Measurement of Pathogen-Specific Human Memory T cell Repertoire Diversity Using a CDR3 beta-specific Microarray, Xujing Wang, Shuang Jia, Lisa Meyer, Maryam B. Yassai, Yuri N. Naumov, Jack Gorski, and Martin J. Hessner

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Different mechanisms control peripheral and central tolerance in hematopoietic chimeric mice, Masahiro Yamazaki, Todd Pearson, Michael A. Brehm, David M. Miller, Julie A. Mangada, Thomas G. Markees, Leonard D. Shultz, John P. Mordes, Aldo A. Rossini, and Dale L. Greiner

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Mitotic occupancy and lineage-specific transcriptional control of rRNA genes by Runx2, Daniel W. Young, Mohammad Q. Hassan, Jitesh Pratap, Mario Galindo, Sayyed K. Zaidi, Suk Hee Lee, Xiaoqing Yang, Ronglin Xie, Amjad Javed, Jean M. Underwood, Paul S. Furcinitti, Anthony N. Imbalzano, Sheldon Penman, Jeffrey A. Nickerson, Martin A. Montecino, Jane B. Lian, Janet L. Stein, Andre J. Van Wijnen, and Gary S. Stein

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Hypocellularity in myelodysplastic syndrome is an independent factor which predicts a favorable outcome, Gang Yue, Suyang Hao, Oluwole Fadare, Stephen P. Baker, Olga Pozdnyakova, Naomi Galili, Bruce A. Woda, Azra Raza, and Sa A. Wang

Publications from 2006

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The Tec family tyrosine kinases Itk and Rlk regulate the development of conventional CD8+ T cells, Luana O. Atherly, Julie Ann Lucas, Martin Felices, Catherine C. Yin, Steven L. Reiner, and Leslie J. Berg

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Human monoclonal antibodies directed against toxins A and B prevent Clostridium difficile-induced mortality in hamsters, Gregory J. Babcock, Teresa J. Broering, Hector J. Hernandez, Robert B. Mandell, Katherine Donahue, Naomi Boatright, Anne M. Stack, Israel Lowy, Robert Graziano, Deborah Molrine, Donna M. Ambrosino, and William D. Thomas

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IFN-induced attrition of CD8 T cells in the presence or absence of cognate antigen during the early stages of viral infections, Kapil Bahl, Sung-Kwon Kim, Claudia Calcagno, Dario Ghersi, Roberto Puzone, Franco Celada, Liisa K. Selin, and Raymond M. Welsh

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Rapid quantification of naive alloreactive T cells by TNF-alpha production and correlation with allograft rejection in mice, Michael A. Brehm, Julie A. Mangada, Thomas G. Markees, Todd Pearson, Keith A. Daniels, Thomas B. Thornley, Raymond M. Welsh, Aldo A. Rossini, and Dale L. Greiner

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MyD88-dependent IL-1 receptor signaling is essential for gouty inflammation stimulated by monosodium urate crystals, Chun-Jen Chen, Yan Shi, Arron Hearn, Katherine A. Fitzgerald, Douglas T. Golenbock, George W. Reed, Shizuo Akira, and Kenneth L. Rock

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Narrowed TCR repertoire and viral escape as a consequence of heterologous immunity, Markus Cornberg, Alex T. Chen, Lee A. Wilkinson, Michael A. Brehm, Sung-Kwon Kim, Claudia Calcagno, Dario Ghersi, Roberto Puzone, Franco Celada, Raymond M. Welsh, and Liisa K. Selin

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Protection against vaccinia virus challenge by CD8 memory T cells resolved by molecular mimicry, Markus Cornberg, Brian S. Sheridan, Frances M. Saccoccio, Michael A. Brehm, and Liisa K. Selin

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Noble metals strip peptides from class II MHC proteins, Stephen J. De Wall, Corrie A. Painter, Jennifer D. Stone, Rajintha M. Bandaranayake, Don C. Wiley, Timothy J. Mitchison, Lawrence J. Stern, and Brian S. DeDecker

Novel ubiquitin neuropathology in frontotemporal dementia with valosin-containing protein gene mutations, Mark S. Forman, Ian R. Mackenzie, Nigel J. Cairns, Eric Swanson, Philip J. Boyer, David A. Drachman, Bharati S. Jhaveri, Jason H. Karlawish, Alan Pestronk, Thomas W. Smith, Pang-Hsien Tu, Giles D. J. Watts, William R. Markesbery, Charles D. Smith, and Virginia E. Kimonis

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Functional interaction of the retinoblastoma and Ini1/Snf5 tumor suppressors in cell growth and pituitary tumorigenesis, Cynthia J. Guidi, Rajini R. Mudhasani, Kathleen Hoover, Andrew Koff, Irwin Leav, Anthony N. Imbalzano, and Stephen N. Jones

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Interpreting the histopathology of chronic cough: a prospective, controlled, comparative study, Richard S. Irwin, Robert Ownbey, Philip T. Cagle, Stephen P. Baker, and Armando E. Fraire

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Dynamics and magnitude of virus-induced polyclonal B cell activation mediated by BCR-independent presentation of viral antigen, Evan Robert Jellison, Heath M. Guay, Eva Szomolanyi-Tsuda, and Raymond M. Welsh

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Costimulation requirements for antiviral CD8+ T cells differ for acute and persistent phases of polyoma virus infection, Christopher C. Kemball, Eun D. Han Lee, Eva Szomolanyi-Tsuda, Thomas A. Pearson, Christian P. Larsen, and Aron E. Lukacher

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Itk and Th2 responses: action but no reaction, Yoko Kosaka, Martin Felices, and Leslie J. Berg

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Osteoblast differentiation and skeletal development are regulated by Mdm2-p53 signaling, Christopher J. Lengner, Heather Anne Steinman, James Gagnon, Thomas W. Smith, Janet E. Henderson, Barbara E. Kream, Gary S. Stein, Jane B. Lian, and Stephen N. Jones

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IMP3 is a novel biomarker for adenocarcinoma in situ of the uterine cervix: an immunohistochemical study in comparison with p16(INK4a) expression, Cuizhen Li, Kenneth L. Rock, Bruce A. Woda, Zhong Jiang, Armando E. Fraire, and Karen A. Dresser

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Cutting edge: an alternative pathway of CD4+ T cell differentiation is induced following activation in the absence of gamma-chain-dependent cytokine signals, Shane Renee Mayack and Leslie J. Berg

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SOX13, A γδ T Cell-Specific Gene, Is a WNT-Signaling Antagonist Regulating T Cell Development: A Dissertation, Heather J. Melichar

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Complex T cell memory repertoires participate in recall responses at extremes of antigenic load, Yuri N. Naumov, Elena N. Naumova, Shalyn Catherine Clute, Levi B. Watkin, Kalyani Kota, Jeffrey P. Gorski, and Liisa K. Selin

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Acute lymphocytic leukemia with eosinophilia and unusual karyotype, S. Rezk, L. Wheelock, J. A. Fletcher, A. M. Oliveira, Christopher P. Keuker, Peter E. Newburger, Bo Xu, Bruce A. Woda, and Patricia M. Miron

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Memory of mice and men: CD8+ T-cell cross-reactivity and heterologous immunity, Liisa K. Selin, Michael A. Brehm, Yuri N. Naumov, Markus Cornberg, Sung-Kwon Kim, Shalyn Catherine Clute, and Raymond M. Welsh

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Partial versus full allogeneic hemopoietic chimerization is a preferential means to inhibit type 1 diabetes as the latter induces generalized immunosuppression, David V. Serreze, Melissa A. Osborne, Yi-Guang Chen, Harold D. Chapman, Todd Pearson, Michael A. Brehm, and Dale L. Greiner

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Cutting edge: elimination of an endogenous adjuvant reduces the activation of CD8 T lymphocytes to transplanted cells and in an autoimmune diabetes model, Yan Shi, Shelly A. Galusha, and Kenneth L. Rock

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Role for TLR2 in NK cell-mediated control of murine cytomegalovirus in vivo, Eva Szomolanyi-Tsuda, Xueya Liang, Raymond M. Welsh, Evelyn A. Kurt-Jones, and Robert W. Finberg

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TLR agonists abrogate costimulation blockade-induced prolongation of skin allografts, Thomas B. Thornley, Michael A. Brehm, Thomas G. Markees, Leonard D. Shultz, John P. Mordes, Raymond M. Welsh, Aldo A. Rossini, and Dale L. Greiner

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Analysis of the Role of Cytosolic Aminopeptidases in the Generation of MHC-Class I Presented Peptides: a Dissertation, Charles Fenton Towne

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The ultrastructure of MCF-10A acini, Jean. M. Underwood, Karen M. Imbalzano, Valerie M. Weaver, Andrew H. Fischer, Anthony N. Imbalzano, and Jeffrey A. Nickerson (Journal of cellular physiology)

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The privacy of T cell memory to viruses, Raymond M. Welsh, Sung-Kwon Kim, Markus Cornberg, Shalyn Catherine Clute, Liisa K. Selin, and Yuri N. Naumov

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Transgenic expression of the viral FLIP MC159 causes lpr/gld-like lymphoproliferation and autoimmunity, Melissa A. Woelfel, Jacqueline G. Bixby, Michael A. Brehm, and Francis Ka-Ming Chan

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Tripeptidyl peptidase II is the major peptidase needed to trim long antigenic precursors, but is not required for most MHC class I antigen presentation, Ian A. York, Nidhi Bhutani, Sophia Zendzian, Alfred L. Goldberg, and Kenneth L. Rock

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Endoplasmic reticulum aminopeptidase 1 (ERAP1) trims MHC class I-presented peptides in vivo and plays an important role in immunodominance, Ian A. York, Michael A. Brehm, Sophia Zendzian, Charles Fenton Towne, and Kenneth L. Rock

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Duodenal intraepithelial lymphocytes in inflammatory disorders of the esophagus and stomach, Mohammad M. Yousef, Rhonda K. Yantiss, Stephen P. Baker, and Barbara F. Banner

Publications from 2005

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Tec family kinases in T lymphocyte development and function, Leslie J. Berg, Lisa D. Finkelstein, Julie Ann Lucas, and Pamela L. Schwartzberg

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Rapid conversion of effector mechanisms from NK to T cells during virus-induced lysis of allogeneic implants in vivo, Michael A. Brehm, Keith A. Daniels, John R. Ortaldo, and Raymond M. Welsh

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Rapid production of TNF-alpha following TCR engagement of naive CD8 T cells, Michael A. Brehm, Keith A. Daniels, and Raymond M. Welsh

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CD4+ T Cell Responses: A Complex Network of Activating and Tolerizing Signals as Revealed by Gene Expression Analysis: A Dissertation, David Spaulding Brown

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Best cases from the AFIP: intrarenal teratoma, David J. Choi, E. Christine Wallace, Armando E. Fraire, and Daniel Baiyee

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Preligand assembly domain-mediated ligand-independent association between TRAIL receptor 4 (TR4) and TR2 regulates TRAIL-induced apoptosis, Lauren Clancy, Karen Mruk, Kristina A. Archer, Melissa A. Woelfel, Juthathip Mongkolsapaya, Gavin R. Screaton, Michael J. Lenardo, and Francis Ka-Ming Chan

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Cross-Reactive CD8 T Cell Responses and Heterologous Immunity During Acute Epstein-Barr Virus Infection: a Dissertation, Shalyn Catherine Clute

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Cross-reactive influenza virus-specific CD8+ T cells contribute to lymphoproliferation in Epstein-Barr virus-associated infectious mononucleosis, Shalyn Catherine Clute, Levi B. Watkin, Markus Cornberg, Yuri N. Naumov, John L. Sullivan, Katherine Luzuriaga, Raymond M. Welsh, and Liisa K. Selin

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Cutting edge: MHC class II-restricted killing in vivo during viral infection, Evan Robert Jellison, Sung-Kwon Kim, and Raymond M. Welsh

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Private specificities of CD8 T cell responses control patterns of heterologous immunity, Sung-Kwon Kim, Markus Cornberg, Xiaoting Z. Wang, Hong D. Chen, Liisa K. Selin, and Raymond M. Welsh

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Uterine Papillary Serous Carcinoma and Endometrioid Carcinoma: Novel Immunostains with Respect to Clinical-Pathologic Factors, Emily Ko

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Overexpression of cytochrome P450 1A1 and its novel spliced variant in ovarian cancer cells: alternative subcellular enzyme compartmentation may contribute to carcinogenesis, Yuet-Kin Leung, Kin-Mang Lau, James A. Mobley, Zhong Jiang, and Shuk-Mei Ho

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The Role of Tec Kinases in CD4+ T Cell Activation: A Dissertation, Cheng-Rui Michael Li

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Itk is not essential for CD28 signaling in naive T cells, Cheng-Rui Michael Li and Leslie J. Berg