The Department of Microbiology and Physiological Systems (MaPS) was founded in 2010, and is the product of a merger between two departments, one focused on microbiology, genetics, and immunology, and the other focused on physiology. Capitalizing on the strength of the respective scientific research programs, the resulting department has strong and synergistic expertise in bacterial and viral pathogenesis, immunology, signal transduction, and fundamental cellular physiology. Current departmental research targets include viral and bacterial pathogens affecting the nervous, respiratory, and digestive systems. The mission of the new department is to address important biological questions broadly relevant to infectious disease and encompassing multiple levels of biological organization, including an understanding of pathogen effects on their target organ systems. This collection showcases the journal articles and other publications and presentations written by faculty and researchers of the Department of Microbiology and Physiological Systems. See earlier collections for selected Physiology and Molecular Genetics and Microbiology publications published before the departmental merger.
Publications from 2021
Controlling gene expression timing through gene regulatory architecture [preprint], Md Zulfikar Ali and Robert C. Brewster
Evolution of protection after maternal immunization for respiratory syncytial virus in cotton rats [preprint], Jorge C.G. Blanco, Lori McGinnes Cullen, Arash Kamali, Fatoumata Y. D. Sylla, Marina S. Boukhavalova, and Trudy G. Morrison
The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response, Yolanda Botti-Lodovico, Andres Colubri, Pardis C. Sabeti, and Christian Happi
The Urinary Microbiome of Older Adults Residing in a Nursing Home Varies with Duration of Residence and Shows Increases in Potential Pathogens, Evan Bradley, Brent Schell, Doyle V. Ward, Vanni Bucci, Abigail Zeamer, and John P. Haran
Viral vector platforms within the gene therapy landscape, Jote T. Bulcha, Yi Wang, Hong Ma, Phillip W. L. Tai, and Guangping Gao
Comparative analysis reveals the long-term co-evolutionary history of parvoviruses and vertebrates [preprint], Matthew A. Campbell, Shannon Loncar, Robert M. Kotin, and Robert J. Gifford
Engineering adeno-associated viral vectors to evade innate immune and inflammatory responses, Ying Kai Chan, Manish Muhuri, Phillip W. L. Tai, Jun Xie, Guangping Gao, and George M. Church
Low-Dose Recombinant Adeno-Associated Virus-Mediated Inhibition of Vascular Endothelial Growth Factor Can Treat Neovascular Pathologies Without Inducing Retinal Vasculitis, Shun-Yun Cheng, Yongwen Luo, Anneliese Malachi, Jihye Ko, Qin Su, Jun Xie, Bo Tian, Haijiang Lin, Xiao Ke, Qiang Zheng, Phillip W. L. Tai, Guangping Gao, and Claudio Punzo
Modeling site-specific nucleotide biases affecting Himar1 transposon insertion frequencies in TnSeq datasets [preprint], Sanjeevani Choudhery, A. Jacob Brown, Chidiebere Akusobi, Eric J. Rubin, Christopher M. Sassetti, and Thomas R. Ioerger
The DNA Translocase of Mycobacteria Is an Essential Protein Required for Growth and Division, Alexander Czuchra
A highly homogeneous polymer composed of tetrahedron-like monomers for high-isotropy expansion microscopy, Ruixuan Gao, Chih-Chieh Jay Yu, Linyi Gao, Kiryl D. Piatkevich, Rachael L. Neve, James B. Munro, Srigokul Upadhyayula, and Edward S. Boyden
Multimodal profiling of lung granulomas reveals cellular correlates of tuberculosis control [preprint], Hannah P. Gideon, Samuel M. Behar, JoAnne L. Flynn, Sarah M. Fortune, and Alex K. Shalek
The epithelial-specific ER stress sensor IRE1β enables host-microbiota crosstalk to affect colon goblet cell development [preprint], Michael J. Grey, Heidi De Luca, Doyle V. Ward, Irini A. M. Kreulen, Sage E. Foley, Jay R. Thiagarajah, Beth A. McCormick, Jerrold R. Turner, and Wayne I. Lencer
Two-Way Regulation of MmpL3 Expression Identifies and Validates Inhibitors of MmpL3 Function in Mycobacterium tuberculosis, Shipra Grover, Curtis A. Engelhart, Esther Perez-Herran, Wei Li, Katherine A. Abrahams, Kadamba Papavinasasundaram, James M. Bean, Christopher M. Sassetti, Alfonso Mendoza-Losana, Gurdyal S. Besra, Mary Jackson, and Dirk Schnappinger
Quantifying the regulatory role of individual transcription factors in Escherichia coli [preprint], Sunil Guharajan, Shivani Chhabra, Vinuselvi Parisutham, and Robert C. Brewster
Inflammation-type dysbiosis of the oral microbiome associates with the duration of COVID-19 symptoms and long-COVID, John P. Haran, Evan Bradley, Abigail Zeamer, Lindsey Cincotta, Marie-Claire Salive, Protiva Dutta, Shafik Mutaawe, Otuwe Anya, Mario Meza-Segura, Ann M. Moormann, Doyle V. Ward, Beth A. McCormick, and Vanni Bucci
Aging, Frailty, and the Microbiome - How Dysbiosis Influences Human Aging and Disease, John P. Haran and Beth A. McCormick
Virtualized clinical studies to assess the natural history and impact of gut microbiome modulation in non-hospitalized patients with mild to moderate COVID-19 a randomized, open-label, prospective study with a parallel group study evaluating the physiologic effects of KB109 on gut microbiota structure and function: a structured summary of a study protocol for a randomized controlled study, John P. Haran, Jose C. Pinero, Yan Zheng, Norma Alonzo Palma, and Mark Wingertzahn
Virtualized Clinical Studies to Assess the Natural History and Impact of Gut Microbiome Modulation in Non-Hospitalized Patients with Mild to Moderate COVID-19 a Randomized, Open-Label, Prospective Study with a Parallel Group Study Evaluating the Physiologic Effects of KB109 on Gut Microbiota Structure and Function: A Structured Summary of a Study Protocol for a Randomized Controlled Study [preprint], John P. Haran, Jose C. Pinero, Yan Zheng, Norma Alonzo Palma, and Mark Wingertzahn
The high prevalence of Clostridioides difficile among nursing home elders associates with a dysbiotic microbiome, John P. Haran, Doyle V. Ward, Shakti K. Bhattarai, Ethan Loew, Protiva Dutta, Amanda Higgins, Beth A. McCormick, and Vanni Bucci
The Nursing Home Older Adult Gut Microbiome Composition Shows Time-dependent Dysbiosis and is Influenced by Medication Exposures, Age, Environment, and Frailty, John P. Haran, Abigail Zeamer, Doyle V. Ward, Protiva Dutta, Vanni Bucci, and Beth A. McCormick
Targeting the Microbiome With KB109 in Outpatients with Mild to Moderate COVID-19 Reduced Medically Attended Acute Care Visits and Improved Symptom Duration in Patients With Comorbidities [preprint], John P. Haran, Yan Zheng, Katharine Knobil, Norma Alonzo Palma, Jonathan F. Lawrence, and Mark A. Wingertzahn
Dcp2 C-terminal Cis-Binding Elements Control Selective Targeting of the Decapping Enzyme by Forming Distinct Decapping Complexes [preprint], Feng He, Chan Wu, and Allan S. Jacobson
The Mycobacterium tuberculosis transposon sequencing database (MtbTnDB): a large-scale guide to genetic conditional essentiality [preprint], Adrian Jinich, Anisha Zaveri, Michael A. DeJesus, Emanuel Flores-Bautista, Clare M. Smith, Christopher M. Sassetti, Jeremy M. Rock, Sabine Ehrt, Dirk Schnappinger, Thomas R. Ioerger, and Kyu Rhee
Chemical-genetic interaction mapping links carbon metabolism and cell wall structure to tuberculosis drug efficacy [preprint], Eun-Ik Koh, Megan K. Proulx, Kenan C. Murphy, Kadamba Papavinasasundaram, Charlotte Reames, Richard E. Baker, Roshanak Aslebagh, Scott A. Shaffer, and Christopher M. Sassetti
Sciviewer enables interactive visual interrogation of single-cell RNA-Seq data from the python programming environment, Dylan Kotliar and Andres Colubri
Canavan Disease as a Model for Gene Therapy-Mediated Myelin Repair, Anoushka Lotun, Dominic J. Gessler, and Guangping Gao
Granulocytes act as a niche for Mycobacterium tuberculosis growth, Rustin R. Lovewell, Christina E. Baer, Bibhuti B. Mishra, Clare M. Smith, and Christopher M. Sassetti
The DHODH inhibitor PTC299 arrests SARS-CoV-2 replication and suppresses induction of inflammatory cytokines, Jeremy Luban, Caterina Strambio-De-Castillia, Yetao Wang, Allan Jacobson, and Stuart W. Peltz
The Role of CD4 T Cell Help in Effective CD8 T Cell Responses during Mycobacterium Tuberculosis Infection, Yu-Jung Lu
CD4 T cell help prevents CD8 T cell exhaustion and promotes control of Mycobacterium tuberculosis infection [preprint], Yu-Jung Lu, Palmira Barreira-Silva, Shayla Boyce, Jennifer Powers, Kelly Cavallo, and Samuel M. Behar
Transcriptome-wide investigation of stop codon readthrough in Saccharomyces cerevisiae, Kotchaphorn Mangkalaphiban, Feng He, Robin Ganesan, Chan Wu, Richard E. Baker, and Allan Jacobson
IFNγ Mediated Monocyte Metabolic Reprogramming, Katelyn J. McCann
Cell wall damage reveals spatial flexibility in peptidoglycan synthesis and a non-redundant role for RodA in mycobacteria [preprint], Emily S. Melzer, Takehiro Kado, Alam García-Heredia, Kuldeepkumar Ramnaresh Gupta, Xavier Meniche, Yasu S. Morita, Christopher M. Sassetti, E. Hesper Rego, and M. Sloan Siegrist
SepA Enhances Shigella Invasion of Epithelial Cells by Degrading Alpha-1 Antitrypsin and Producing a Neutrophil Chemoattractant, Mario Meza-Segura, James R. Birtley, Ana Maldonado-Contreras, Christian Mueller, Karl J. Simin, Lawrence J. Stern, and Beth A. McCormick
Overcoming innate immune barriers that impede AAV gene therapy vectors, Manish Muhuri, Yukiko Maeda Garrison, Hong Ma, Sanjay Ram, Katherine A. Fitzgerald, Phillip W. L. Tai, and Guangping Gao
Novel Combinatorial MicroRNA-Binding Sites in AAV Vectors Synergistically Diminish Antigen Presentation and Transgene Immunity for Efficient and Stable Transduction, Manish Muhuri, Wei Zhan, Yukiko Maeda Garrison, Jia Li, Anoushka Lotun, Jennifer Chen, Katelyn E. Sylvia, Ishani Dasgupta, Motahareh Arjomandnejad, Thomas Nixon, Allison M. Keeler, Sangeetha Manokaran, Ran He, Qin Su, Phillip W. L. Tai, and Guangping Gao
Antibody affinity as a driver of signal generation in a paper-based immunoassay for Ebola virus surveillance, Lara P. Murray, Ramesh Govindan, Andrea C. Mora, James B. Munro, and Charles R. Mace
Proanthocyanidin-enriched cranberry extract induces resilient bacterial community dynamics in a gnotobiotic mouse model, Catherine C. Neto, Benedikt M. Mortzfeld, John R. Turbitt, Shakti K. Bhattarai, Vladimir Yeliseyev, Nicholas DiBenedetto, Lynn Bry, and Vanni Bucci
Tissue-resident-like CD4+ T cells secreting IL-17 control Mycobacterium tuberculosis in the human lung, Paul Ogongo, Liku B. Tezera, Amanda Ardain, Shepherd Nhamoyebonde, Duran Ramsuran, Alveera Singh, Abigail Ng'oepe, Farina Karim, Taryn Naidoo, Khadija Khan, Kaylesh J. Dullabh, Michael Fehlings, Boon Heng. Lee, Alessandra Nardin, Cecilia S. Lindestam Arlehamn, Alessandro Sette, Samuel M. Behar, Adrie Jc. Steyn, Rajhmun Madansein, Henrik N. Kloverpris, Paul T. Elkington, and Alasdair Leslie
Cranberry Proanthocyanidins and Dietary Oligosaccharides Synergistically Modulate Lactobacillus plantarum Physiology, Ezgi Ozcan, Michelle R. Rozycki, and David A. Sela
Effect of Levodopa Initiation on the Gut Microbiota in Parkinson's Disease, Natalia Palacios, Anas Hannoun, Julie M. Flahive, Doyle V. Ward, Kelsey Goostrey, Anindita Deb, and Kara M. Smith
CNBP, REL, and BHLHE40 variants are associated with IL-12 and IL-10 responses and tuberculosis risk [preprint], Javeed A. Shah, Christopher M. Sassetti, and Katherine A. Fitzgerald
c-Jun N-terminal kinase (JNK) signaling contributes to cystic burden in polycystic kidney disease [preprint], Abigail O. Smith, Julie A. Jonassen, Kenley Preval, Roger J. Davis, and Gregory J. Pazour
Sirtuin 3 Downregulation in Mycobacterium tuberculosis-Infected Macrophages Reprograms Mitochondrial Metabolism and Promotes Cell Death, Lorissa J. Smulan, Nuria M. Martinez, Michael C. Kiritsy, Chido L. Kativhu, Kelly Cavallo, Christopher M. Sassetti, Amit Singhal, Heinz G. Remold, and Hardy Kornfeld
The Case for Altruism in Institutional Diagnostic Testing [preprint], Ivan Specht, Kian Sani, Yolanda Botti-Lodovico, Michael Hughes, Kristin Heumann, Amy Bronson, John Marshall, Emily Baron, Eric Parrie, Olivia Glennon, Ben Fry, Andres Colubri, and Pardis C. Sabeti
A budding yeast model for human disease mutations in the EXOSC2 cap subunit of the RNA exosome complex, Maria C. Sterrett, Liz Enyenihi, Sara W. Leung, Laurie Hess, Sarah E. Strassler, Daniela Farchi, Richard S. Lee, Elise S. Withers, Isaac Kremsky, Richard E. Baker, Munira A. Basrai, Ambro van Hoof, Milo B. Fasken, and Anita H. Corbett
Efficacious, safe, and stable inhibition of corneal neovascularization by AAV-vectored anti-VEGF therapeutics, Wenqi Su, Shuo Sun, Bo Tian, Phillip W. L. Tai, Yongwen Luo, Jihye Ko, Wei Zhan, Xiao Ke, Qiang Zheng, Xiaorong Li, Hua Yan, Guangping Gao, and Haijiang Lin
Start codon disruption with CRISPR/Cas9 prevents murine Fuchs' endothelial corneal dystrophy, Hironori Uehara, Guangping Gao, and Balamurali K. Ambati
Common Polymorphisms in the Glycoproteins of Human Cytomegalovirus and Associated Strain-Specific Immunity, Hsuan-Yuan Wang, Sarah M. Valencia, Susanne P. Pfeifer, Jeffrey D. Jensen, Timothy F. Kowalik, and Sallie R. Permar
NHR-49/PPAR-alpha and HLH-30/TFEB cooperate for C. elegans host defense via a flavin-containing monooxygenase, Khursheed A. Wani, Debanjan Goswamy, Stefan Taubert, Ramesh Ratnappan, Arjumand Ghazi, and Javier E. Irazoqui
The Intestinal and Oral Microbiomes Are Robust Predictors of COVID-19 Severity the Main Predictor of COVID-19-related Fatality [preprint], Doyle V. Ward, Shakti Bhattarai, Mayra Rojas-Correa, Ayan Purkayastha, Devon Holler, Ming Da Qu, William G. Mitchell, Jason D. Yang, Samuel Fountain, Abigail Zeamer, Catherine Forconi, Gavin Fujimori, Boaz Odwar, Caitlin Cawley, Beth A. McCormick, Ann M. Moormann, Mireya Wessolossky, Vanni Bucci, and Ana Maldonado-Contreras
Gastrointestinal microbiota composition predicts peripheral inflammatory state during treatment of human tuberculosis, Matthew F. Wipperman, Shakti K. Bhattarai, Charles Kyriakos Vorkas, Venkata Suhas Maringati, Ying Taur, Laurent Mathurin, Katherine McAulay, Stalz Charles Vilbrun, Daphie Francois, James Bean, Kathleen F. Walsh, Carl Nathan, Daniel W. Fitzgerald, Michael S. Glickman, and Vanni Bucci
Cellular and Tissue Selectivity of AAV Serotypes for Gene Delivery to Chondrocytes and Cartilage, Dong Suk Yoon, Kyoung-Mi Lee, Sehee Cho, Eun Ae Ko, Jihyun Kim, Sujin Jung, Jae-Hyuck Shim, Guangping Gao, Kwang Hwan Park, and Jin Woo Lee
Vectored Immunotherapeutics for Infectious Diseases: Can rAAVs Be The Game Changers for Fighting Transmissible Pathogens?, Wei Zhan, Manish Muhuri, Phillip W. L. Tai, and Guangping Gao
Publications from 2020
Probing Mechanisms of Transcription Elongation Through Cell-to-Cell Variability of RNA Polymerase, Zulfikar Ali, Sandeep Choubey, Dipjyoti Das, and Robert C. Brewster (Biophysical journal, 2020-04-07)
Inherent regulatory asymmetry emanating from network architecture in a prevalent autoregulatory motif, Zulfikar Ali, Vinuselvi Parisutham, Sandeep Choubey, and Robert C. Brewster
Skp, Cullin, F-box (SCF)-Met30 and SCF-Cdc4-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A for Chromosomal Stability in Budding Yeast, Wei-Chun Au, Richard E. Baker, and Munira A. Basrai
Cell Cycle Associated Gene Expression Predicts Function in Mycobacteria, Aditya C. Bandekar
Cell cycle-associated expression patterns predict gene function in mycobacteria [preprint], Aditya Bandekar, Sishir Subedi, Thomas Ioerger, and Christopher M. Sassetti
Genetic Identification of Novel Mycobacterium tuberculosis Susceptibility and Survival Mechanisms During Antibiotic Treatment, Michelle M. Bellerose
Distinct Bacterial Pathways Influence the Efficacy of Antibiotics against Mycobacterium tuberculosis, Michelle Bellerose, Megan K. Proulx, Clare M. Smith, Richard E. Baker, Thomas R. Ioerger, and Christopher M. Sassetti
Docosanoic acid conjugation to siRNA enables functional and safe delivery to skeletal and cardiac muscles, Annabelle Biscans, Jillian Caiazzi, Nicholas McHugh, Vignesh Hariharan, Manish Muhuri, and Anastasia Khvorova
Acidic pH Triggers Lipid Mixing Mediated by Lassa Virus GP, Uriel Bulow, Ramesh Govindan, and James B. Munro
Host immunity increases Mycobacterium tuberculosis reliance on cytochrome bd oxidase [preprint], Yi Cai, Eleni Jaecklein, Jared Mackenzie, Kadamba Papavinasasundaram, Michigan State University, Xinchun Chen, Africa Health Research Institute, and Christopher M. Sassetti
ORAN: A meta-modeling platform to drive real-life and online outbreak simulations, Andres Colubri
Preventing Outbreaks through Interactive, Experiential Real-Life Simulations, Andres Colubri, Molly Kemball, Kian Sani, Chloe Boehm, Karen Mutch-Jones, Ben Fry, Todd Brown, and Pardis C. Sabeti
Flexibility and constraint in preimplantation gene regulation in mouse [preprint], Colin C. Conine, Marina Krykbaeva, Lina Song, Robert C. Brewster, Nir Friedman, and Oliver J. Rando
Comparisons of Antibody Populations in Different Pre-Fusion F VLP-Immunized Cotton Rat Dams and Their Offspring, Lori McGinnes Cullen, Marina S. Boukhvalova, Jorge C. G. Blanco, and Trudy G. Morrison
Conformational changes in the Ebola virus membrane fusion machine induced by pH, Ca2+, and receptor binding, Dibyendu Kumar Das, Uriel Bulow, William E. Diehl, Natasha D. Durham, Fernando Senjobe, Kartik Chandran, Jeremy Luban, and James B. Munro
Bifidobacterium infantis Metabolizes 2'Fucosyllactose-Derived and Free Fucose Through a Common Catabolic Pathway Resulting in 1,2-Propanediol Secretion, Liv R. Dedon, Ezgi Ozcan, Asha Rani, and David A. Sela
Real-Time Analysis of Individual Ebola Virus Glycoproteins Reveals Pre-Fusion, Entry-Relevant Conformational Dynamics, Natasha D. Durham, Angela R. Howard, Ramesh Govindan, Fernando Senjobe, J. Maximilian Fels, William E. Diehl, Jeremy Luban, Kartik Chandran, and James B. Munro
Dbf4-Dependent Kinase (DDK)-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A in Saccharomyces cerevisiae, Jessica R. Eisenstatt, Lars Boeckmann, Wei-Chun Au, Valerie Garcia, Levi Bursch, Josefina Ocampo, Michael Costanzo, Michael Weinreich, Robert A. Sclafani, Anastasia Baryshnikova, Chad L. Myers, Charles Boone, David J. Clark, Richard E. Baker, and Munira A. Basrai
Single-cell profiling of tuberculosis lung granulomas reveals functional lymphocyte signatures of bacterial control [preprint], Hannah P. Gideon, Samuel M. Behar, and Alex Shalek
Single-cell profiling of tuberculosis lung granulomas reveals functional lymphocyte signatures of bacterial control [preprint], Hannah P. Gideon, Samuel M. Behar, and Alex Shalek
Analysis of Recombinant Adeno-Associated Virus (rAAV) Sample Morphology Using Negative Staining and High-Resolution Electron Microscopy, Gregory M. Hendricks, Miguel Sena-Esteves, and Guangping Gao
Precision Cas9 Genome Editing in vivo with All-in-one, Self-targeting AAV Vectors [preprint], Raed Ibraheim, Phillip W. L. Tai, Aamir Mir, Nida Javeed, Jiaming Wang, Tomas Rodriguez, Samantha J. Nelson, Eraj Khokhar, Esther Mintzer, Stacy Maitland, Yueying Cao, Guangping Gao, and Erik J. Sontheimer
Key Roles of MiT Transcription Factors in Innate Immunity and Inflammation, Javier E. Irazoqui
Imposed mutational meltdown as an antiviral strategy, Jeffrey D. Jensen, Ryan A. Stikeleather, Timothy F. Kowalik, and Michael Lynch
Gp41-targeted antibodies restore infectivity of a fusion-deficient HIV-1 envelope glycoprotein, Vinita R. Joshi, Ruchi M. Newman, Melissa L. Pack, Karen A. Power, James B. Munro, Ken Okawa, Navid Madani, Joseph G. Sodroski, Aaron G. Schmidt, and Todd M. Allen
M. tuberculosis Reprograms Hematopoietic Stem Cells to Limit Myelopoiesis and Impair Trained Immunity, Nargis Khan, Christopher M. Sassetti, and Maziar Divangahi
Functional Genomics of Mammalian Innate Immunity, Michael C. Kiritsy
A genome-wide screen in macrophages identifies new regulators of IFNγ-inducible MHCII that contribute to T cell activation [preprint], Michael C. Kiritsy, Michigan State University, Michigan State University, Michigan State University, Audrey E. Lord, M. Pontus A. Orning, Roland Elling, Katherine A. Fitzgerald, and Michigan State University
Mitochondrial respiration contributes to the interferon gamma response in antigen presenting cells [preprint], Michael C. Kiritsy, Daniel Mott, Samuel M. Behar, Christopher M. Sassetti, and Andrew J. Olive
CD11cHi monocyte-derived macrophages are a major cellular compartment infected by Mycobacterium tuberculosis, Jinhee Lee, Shayla Boyce, Jennifer Powers, Christina E. Baer, Christopher M. Sassetti, and Samuel M. Behar
A C. elegans neuron both promotes and suppresses motor behavior to fine tune motor output [preprint], Zhaoyu Li, Jiejun Zhou, Khursheed A. Wani, Teng Yu, Elizabeth A. Ronan, University of Michigan - Ann Arbor, Jianfeng Liu, and X.Z. Shawn Xu
The DHODH Inhibitor PTC299 Arrests SARS-CoV-2 Replication and Suppresses Induction of Inflammatory Cytokines [preprint], Jeremy Luban, Caterina Strambio De Castillia, Yetao Wang, Allan Jacobson, and Stuart Peltz
Dysbiosis in a canine model of human fistulizing Crohn's disease, Ana Maldonado-Contreras, Lluis Ferrer, Caitlin Cawley, Sarah Crain, Shakti Bhattarai, Juan Toscano, Doyle V. Ward, and Andrew Hoffman
Transcriptome-wide investigation of stop codon readthrough in Saccharomyces cerevisiae [preprint], Kotchaphorn Mangkalaphiban, Feng He, Robin Ganesan, Chan Wu, Richard E. Baker, and Allan Jacobson
Transcriptome-wide investigation of stop codon readthrough in Saccharomyces cerevisiae [poster], Kotchaphorn Mangkalaphiban, Feng He, Robin Ganesan, Chan Wu, Richard E. Baker, and Allan S. Jacobson
Scalable learning of interpretable rules for the dynamic microbiome domain [preprint], Venkata Suhas Maringanti, Vanni Bucci, and Georg K. Gerber
A Developmental Analysis of Juxtavascular Microglia Dynamics and Interactions with the Vasculature, Erica Mondo, Shannon C. Becker, Amanda G. Kautzman, Martina Schifferer, Christina E. Baer, Jiapei Chen, Eric J. Huang, Mikael Simons, and Dorothy P. Schafer
A developmental analysis of juxtavascular microglia dynamics and interactions with the vasculature [preprint], Erica Mondo, Shannon C. Becker, Amanda G. Kautzman, Martina Schifferer, Christina E. Baer, Jiapei Chen, Eric J. Huang, Mikael Simons, and Dorothy P. Schafer
Is smaller better? Vaccine targeting recombinant receptor-binding domain might hold the key for mass production of effective prophylactics to fight the COVID-19 pandemic, Manish Muhuri and Guangping Gao
Mycobacterium tuberculosis evasion of Guanylate Binding Protein-mediated host defense in mice requires the ESX1 secretion system [preprint], Andrew J. Olive, Clare M. Smith, Christina E. Baer, Jörn Coers, and Christopher M. Sassetti
Recovery of viable endocrine-specific cells and transcriptomes from human pancreatic islet-engrafted mice, Sambra D. Redick, Linda Leehy, Ann R. Rittenhouse, David M. Blodgett, Alan G. Derr, Alper Kucukural, Manuel Garber, Leonard D. Shultz, Dale L. Greiner, Jennifer P. Wang, David M. Harlan, Rita Bortell, and Agata Jurczyk
Containing the Spread of Infectious Disease on College Campuses [preprint], Mirai Shah, Gabrielle Ferra, Susan Fitzgerald, Paul J. Barreira, Pardis C. Sabeti, and Andres Colubri
Metabolic interactions in microbial communities, Elizabeth A. Shank
Transparent soil microcosms for live-cell imaging and non-destructive stable isotope probing of soil microorganisms, Kriti Sharma, Marton Palatinszky, Georgi Nikolov, David Berry, and Elizabeth A. Shank
Content and performance of the MiniMUGA genotyping array, a new tool to improve rigor and reproducibility in mouse research [preprint], John Sebastian Sigmon, Christopher M. Sassetti, Clare M. Smith, Martin T. Ferris, Leonard McMillan, and Fernando Pardo-Manuel de Villena