Article Title

Description and Annotation of Biomedical Data Sets

Authors

Jen Ferguson, Harvard School of Public HealthFollow

Publication Date

February 2012

Article Type

EScience in Action

DOI Link

http://dx.doi.org/10.7191/jeslib.2012.1000

Abstract

Deposition of biomedical data sets is on the rise as more scientists submit experimental data to accompany their publications. Scientists are also increasingly reusing these publicly available data sets in their own work. Despite these developments, lack of both context and metadata can create barriers to understanding and repurposing these data sets. Researchers from the Bioinformatics Core Group in the Harvard School of Public Health attempted to address this issue by assembling a team of data curators who used the open source software suite ISA tools to annotate and contextualize microarray data sets.

This paper describes the workflow and software used in curating these data sets, discusses similarities and differences in the approaches of team members to the work, and suggests possible roles for librarians in similar data curation projects.

Keywords

curation, microarray, escience, ISA, gene expression

Recommended Citation

Ferguson, Jen. 2012. "Description and Annotation of Biomedical Data Sets." Journal of eScience Librarianship 1(1): e1000. http://dx.doi.org/10.7191/jeslib.2012.1000

Rights and Permissions

Copyright © 2012 The Author(s).

Creative Commons License

This work is licensed under a Creative Commons Attribution-Noncommercial-Share Alike 3.0 License.