The Program in Biochemistry & Molecular Pharmacology is an academic program of the Graduate School of Biomedical Sciences (GSBS) at the University of Massachusetts Medical School. The program offers graduate study and research focused in the areas of molecular, cellular and regulatory biochemistry; molecular biophysics; chemical biology; and structural biology. This collection showcases publications and presentations authored by students in this program.

Attention GSBS Biochemistry & Molecular Pharmacology students: To submit your publications, go to GSBS Student Publications and click on Submit Research in the left sidebar. You’ll need to log in or create a free account. If you have the article's PubMed ID, submission is very easy. Enter the PubMed ID and information from PubMed will be used to populate the submission form. Questions? Contact Lisa Palmer.

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Publications from 1997

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Identification of a nuclear matrix targeting signal in the leukemia and bone-related AML/CBF-alpha transcription factors, Congmei Zeng, Andre J. Van Wijnen, Janet L. Stein, Shari Meyers, Wuhua Sun, Lindsay S. Shopland, Jeanne B. Lawrence, Sheldon Penman, Jane B. Lian, Gary S. Stein, and Scott W. Hiebert

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Polysome-associated mRNAs are substrates for the nonsense-mediated mRNA decay pathway in Saccharomyces cerevisiae, Shuang Zhang, Ellen Marie Welch, Kevin Hagan, Agneta H. Brown, Stuart W. Peltz, and Allan Jacobson

Publications from 1996

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Yeast TAF(II)90 is required for cell-cycle progression through G2/M but not for general transcription activation, Lynne Marie Apone, Ching-man A. Virbasius, Joseph C. Reese, and Michael R. Green

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Analysis of low zone tolerance induction in normal and B cell-deficient mice, Allison Michelle Baird and David C. Parker

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An AML-1 consensus sequence binds an osteoblast-specific complex and transcriptionally activates the osteocalcin gene, Chaitali Banerjee, Scott W. Hiebert, Janet L. Stein, Jane B. Lian, and Gary S. Stein

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Transforming growth factor-beta 1 responsiveness of the rat osteocalcin gene is mediated by an activator protein-1 binding site, Chaitali Banerjee, Janet L. Stein, Andre J. Van Wijnen, Baruch Frenkel, Jane B. Lian, and Gary S. Stein

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Role of different lymphoid tissues in the initiation and maintenance of DNA-raised antibody responses to the influenza virus H1 glycoprotein, Christine Margaret Boyle, Merribeth J. Morin, Robert G. Webster, and Harriet L. Robinson

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Agonist-specific conformational changes in the yeast alpha-factor pheromone receptor, Gul Bukusoglu and Duane D. Jenness

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Hepatic 5-aminolevulinic acid synthase mRNA stability is modulated by inhibitors of heme biosynthesis and by metalloporphyrins, Edward Earl Cable, Otto S. Gildemeister, Joyce A. Pepe, Susan E. Donohue, Richard W. Lambrecht, and Herbert L. Bonkovsky

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Regulation of GLUT1-mediated sugar transport by an antiport/uniport switch mechanism, Erin K. Cloherty, Deborah L. Diamond, Karen Schray Heard, and Anthony Carruthers

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Human erythrocyte sugar transport is incompatible with available carrier models, Erin K. Cloherty, Karen Schray Heard, and Anthony Carruthers

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Embryonic stem cells differentiated in vitro as a novel source of cells for transplantation, Jonathan H. Dinsmore, Judson Ratliff, Terrence W. Deacon, Peyman Pakzaban, Douglas Jacoby, Wendy R. Galpern, and Ole Isacson

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Molecular characterization of the 50-kD subunit of dynactin reveals function for the complex in chromosome alignment and spindle organization during mitosis, Christophe de Jesus Echeverri, Bryce Mark Paschal, Kevin T. Vaughan, and Richard B. Vallee

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Basal and vitamin D-responsive activity of the rat osteocalcin promoter in stably transfected osteosarcoma cells: requirement of upstream sequences for control by the proximal regulatory domain, Baruch Frenkel, Martin A. Montecino, Jack Green, Fauzia Aslam, R. Desai, Chaitali Banerjee, Janet L. Stein, Jane B. Lian, and Gary S. Stein

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Identification of two epitopes on the dengue 4 virus capsid protein recognized by a serotype-specific and a panel of serotype-cross-reactive human CD4+ cytotoxic T-lymphocyte clones, Susan J. Gagnon, Weilan Zeng, Ichiro Kurane, and Francis A. Ennis

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Xenotransplantation of porcine fetal ventral mesencephalon in a rat model of Parkinson's disease: functional recovery and graft morphology, Wendy R. Galpern, Lindsay H. Burns, Terrence W. Deacon, Jonathan H. Dinsmore, and Ole Isacson

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Cell-mediated delivery of brain-derived neurotrophic factor enhances dopamine levels in an MPP+ rat model of substantia nigra degeneration, Wendy R. Galpern, David M. Frim, Stephen B. Tatter, C. Anthony Altar, M. Flint Beal, and Ole Isacson

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NGF attenuates 3-nitrotyrosine formation in a 3-NP model of Huntington's disease, Wendy R. Galpern, Russell T. Matthews, M. Flint Beal, and Ole Isacson

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Formation of c-Cbl.phosphatidylinositol 3-kinase complexes on lymphocyte membranes by a p56lck-independent mechanism, David Alan Hartley and Silvia Corvera

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Bone tissue-specific transcription of the osteocalcin gene: role of an activator osteoblast-specific complex and suppressor hox proteins that bind the OC box, Heidi M. Hoffmann, T. L. Beumer, Shamim Rahman, Laura R. McCabe, Chaitali Banerjee, Fauzia Aslam, J. A. Tiro, Andre J. Van Wijnen, Janet L. Stein, Gary S. Stein, and Jane B. Lian

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Simian immunodeficiency virus DNA vaccine trial in macaques, Shan Lu, James Arthos, David C. Montefiori, Yasuhiro Yasutomi, Kelledy Manson, Farah Mustafa, Eric Johnson, Joseph C. Santoro, J. Wissink, James I. Mullins, Joel R. Haynes, Norman L. Letvin, Michael Wyand, and Harriet L. Robinson

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Developmental expression and activities of specific fos and jun proteins are functionally related to osteoblast maturation: role of Fra-2 and Jun D during differentiation, Laura R. McCabe, Chaitali Banerjee, R. Kundu, Robert J. Harrison, Paul R. Dobner, Janet L. Stein, Jane B. Lian, and Gary S. Stein

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The BB/Wor rat and the balance hypothesis of autoimmunity, John P. Mordes, Rita Bortell, John Doukas, Mark R. Rigby, Barbara J. Whalen, Danny Zipris, Dale L. Greiner, and Aldo A. Rossini

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Molecular characterization of mitofilin (HMP), a mitochondria-associated protein with predicted coiled coil and intermembrane space targeting domains, Paul R. Odgren, Gary Toukatly, Peter Lawrence Bangs, Reid Gilmore, and Edward G. Fey

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The cyclin-dependent kinase inhibitor p21 (WAF1) is required for survival of differentiating neuroblastoma cells, Wojciech Poluha, Dorota K. Poluha, Baochong B. Chang, Nancy E. Crosbie, Christopher M. Schonhoff, Daniel L. Kilpatrick, and Alonzo H. Ross

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Rat RT6.2 and mouse Rt6 locus 1 are NAD+: arginine ADP ribosyltransferases with auto-ADP ribosylation activity, Mark R. Rigby, Rita Bortell, Linda A. Stevens, Joel Moss, Toshihiro Kanaitsuka, Hirofumi Shigeta, John P. Mordes, Dale L. Greiner, and Aldo A. Rossini

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DNA vaccines, Harriet L. Robinson, Shan Lu, David Marc Feltquate, Celia Aurora Tiglao Torres, Joann M. Richmond, Christine Margaret Boyle, Merribeth J. Morin, Joseph C. Santoro, Robert G. Webster, David C. Montefiori, Yasuhiro Yasutomi, Norman L. Letvin, Kelledy Manson, Michael Wyand, and Joel R. Haynes

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The neurotrophin receptor, gp75, forms a complex with the receptor tyrosine kinase TrkA, Alonzo H. Ross, Marie-Claire Daou, Christine A. McKinnon, Peter J. Condon, Mahesh B. Lachyankar, Robert M. Stephens, David R. Kaplan, and David E. Wolf

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Ordered water molecules as key allosteric mediators in a cooperative dimeric hemoglobin, William E. Royer, Animesh Dev Pardanani, Quentin H. Gibson, Eric S. Peterson, and Joel M. Friedman

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Potential sites of PI-3 kinase function in the endocytic pathway revealed by the PI-3 kinase inhibitor, wortmannin, Howard S. Shpetner, Marguerite Joly, David Alan Hartley, and Silvia Corvera

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A JNK signal transduction pathway that mediates morphogenesis and an immune response in Drosophila, Hayla Karen Sluss, Zhiqiang Han, Tamera Barrett, Deborah C. I. Goberdhan, Clive Wilson, Roger J. Davis, and Y. Tony Ip

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Transcriptional control of osteoblast growth and differentiation, Gary S. Stein, Jane B. Lian, Janet L. Stein, Andre J. Van Wijnen, and Martin A. Montecino

Control of cell cycle regulated histone genes during proliferation and differentiation, Janet L. Stein, Andre J. Van Wijnen, Jane B. Lian, and Gary S. Stein

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CDP/cut is the DNA-binding subunit of histone gene transcription factor HiNF-D: a mechanism for gene regulation at the G1/S phase cell cycle transition point independent of transcription factor E2F, Andre J. Van Wijnen, Maria F. van Gurp, Marleen C. De Ridder, Cristina Tufarelli, Thomas J. Last, Mark J. Birnbaum, Patricia S. Vaughan, Antonio Giordano, Krek Wilhelm, Ellis J. Neufeld, Janet L. Stein, and Gary S. Stein

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Regulation of B cell survival in xid mice by the proto-oncogene bcl-2, Robert T. Woodland, Madelyn R. Schmidt, Stanley J. Korsmeyer, and Kathryn A. Gravel

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Coexpression of B7-1 and antigen blocks tolerance induction to antigen presented by resting B cells, Victoria Nicole Yuschenkoff, Michael P. Sethna, Gordon J. Freeman, and David C. Parker

Publications from 1995

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Contributions of distal and proximal promoter elements to glucocorticoid regulation of osteocalcin gene transcription, Fauzia Aslam, Victoria Shalhoub, Andre J. Van Wijnen, Chaitali Banerjee, Rita Bortell, A. Rauf Shakoori, Gerald Litwack, Janet L. Stein, Gary S. Stein, and Jane B. Lian

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Distribution of iron in the liver predicts the response of chronic hepatitis C infection to interferon therapy, Ann L. Barton, Barbara F. Banner, Edward Earl Cable, and Herbert L. Bonkovsky

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Major histocompatibility complex class I antigens and the control of viral infections by natural killer cells, Randy R. Brutkiewicz and Raymond M. Welsh

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Ethanol inhibition of recombinant heteromeric NMDA channels in the presence and absence of modulators, Benson Chu, Vellareddy Anantharam, and Steven N. Treistman

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The contrasting effects of colony-stimulating factor-1 and epidermal growth factor on tooth eruption in the rat, Matthew J. Cielinski, M. Jolie, Gary E. Wise, and Sandy C. Marks

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Bone metabolism in the osteopetrotic rat mutation microphthalmia blanc, Matthew J. Cielinski and Sandy C. Marks

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High prevalence of serological markers of autoimmunity in patients with chronic hepatitis C, Bernard D. Clifford, Daniel Donahue, Lynda Smith, Edward Earl Cable, Brigit Luttig, Michael P. Manns, and Herbert L. Bonkovsky

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Control of 1,25-dihydroxyvitamin D3 receptor-mediated enhancement of osteocalcin gene transcription: effects of perturbing phosphorylation pathways by okadaic acid and staurosporine, Rajesh K. Desai, Andre J. Van Wijnen, Janet L. Stein, Gary S. Stein, and Jane B. Lian

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Characterization of promoter elements required for cell-specific expression of the neurotensin/neuromedin N gene in a human endocrine cell line, B. Mark Evers, Xiaofu Wang, Zhichao Zhou, Courtney M. Townsend, Gerard P. McNeil, and Paul R. Dobner

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Calcium signalling during chemotaxis, Fredric S. Fay, Susan H. Gilbert, and Rodney Arthur Brundage

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Electrostatic guidance of catalysis by a conserved glutamic acid in Escherichia coli dTMP synthase and bacteriophage T4 dCMP hydroxymethylase, Larry W. Hardy, Karen Lorraine Graves, and Ellen A. Nalivaika

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Synergistic activation of neurotensin/neuromedin N gene expression by c-Jun and glucocorticoids: novel effects of Fos family proteins, Robert J. Harrison, Gerard P. McNeil, and Paul R. Dobner

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Specific association of the beta isoform of the p85 subunit of phosphatidylinositol-3 kinase with the proto-oncogene c-cbl, David Alan Hartley, Herman Meisner, and Silvia Corvera

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Mutant and native human beta-amyloid precursor proteins in transgenic mouse brain, David S. Howland, Mary J. Savage, Frederick A. Huntress, Racheal E. Wallace, Daniel A. Schwartz, Tamalette Loh, Richard H. Melloni, Louis J. DeGennaro, Barry D. Greenberg, and Robert Siman

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Transplanted xenogeneic neural cells in neurodegenerative disease models exhibit remarkable axonal target specificity and distinct growth patterns of glial and axonal fibres, Ole Isacson, Terrence W. Deacon, Peyman Pakzaban, Wendy R. Galpern, Jonathan H. Dinsmore, and Lindsay H. Burns

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In vivo functional analysis of the Ras exchange factor son of sevenless, Chris A. Karlovich, Laura Bonfini, Linda McCollam, Ronald D. Rogge, Andrea Daga, Michael P. Czech, and Utpal Banerjee

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In vivo occupancy of histone gene proximal promoter elements reflects gene copy number-dependent titratable transactivation factors and cross-species compatibility of regulatory sequences, Paul E. Kroeger, Andre J. Van Wijnen, Urs Pauli, Kenneth Lynn Wright, Gary S. Stein, and Janet L. Stein

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Role of the Saccharomyces cerevisiae general regulatory factor CP1 in methionine biosynthetic gene transcription, Kevin F. O'Connell, Yolande Surdin-Kerjan, and Richard E. Baker

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Characterization and overexpression of the gene encoding Staphylococcus aureus DNA polymerase III, Diane Frances Pacitti, Marjorie H. Barnes, Dong H. Li, and Neal C. Brown

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Pro-inflammatory cytokines and environmental stress cause p38 mitogen-activated protein kinase activation by dual phosphorylation on tyrosine and threonine, Joel Raingeaud, Shashi Gupta, Jeffrey Scott Rogers, Martin Dickens, Jiahuai Han, Richard J. Ulevitch, and Roger J. Davis

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Lymphocyte apoptosis during the silencing of the immune response to acute viral infections in normal, lpr, and Bcl-2-transgenic mice, Enal Shahid Razvi, Zhong Jiang, Bruce A. Woda, and Raymond M. Welsh

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Apoptosis in viral infections, Enal Shahid Razvi and Raymond M. Welsh

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In vivo state of antiviral CTL precursors. Characterization of a cycling cell population containing CTL precursors in immune mice, Enal Shahid Razvi, Raymond M. Welsh, and Hugh I. McFarland

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Mutational analysis of the leucine zipper motif in the Newcastle disease virus fusion protein, Julie N. Reitter, Theresa A. Sergel, and Trudy G. Morrison

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Tissue distribution of zinc-mesoporphyrin in rats: relationship to inhibition of heme oxygenase, Shirley M. Russo, Joyce A. Pepe, Susan E. Donohue, Edward Earl Cable, Richard W. Lambrecht, and Herbert L. Bonkovsky

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Progression of a vesicular stomatitis virus infection in primary lymphocytes is restricted at multiple levels during B cell activation, Madelyn R. Schmidt, Kathryn A. Gravel, and Robert T. Woodland

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Mismatch correction acts as a barrier to homeologous recombination in Saccharomyces cerevisiae, Erica Marie Selva, Liguo New, Gray F. Crouse, and Robert S. Lahue

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Phosphorylation of NUMA occurs during nuclear breakdown and not mitotic spindle assembly, Cynthia A. Sparks, Edward G. Fey, Charles A. Vidair, and Stephen J. Doxsey

Butylphenyl-dGTP as a structural probe of B family DNA polymerases, James Michael Walker Stattel and George E. Wright

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Contributions of nuclear architecture to transcriptional control, Gary S. Stein, Andre J. Van Wijnen, Janet L. Stein, Jane B. Lian, and Martin A. Montecino

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A STAT factor mediates the sexually dimorphic regulation of hepatic cytochrome P450 3A10/lithocholic acid 6 beta-hydroxylase gene expression by growth hormone, Asha Subramanian, Jose Manuel Teixeira, Jianming Wang, and Gregorio Gil

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Major histocompatibility complex class I-restricted cytotoxic T lymphocyte responses to Epstein-Barr virus in children, Hisashi Tamaki, Brian L. Beaulieu, Mohan Somasundaran, and John L. Sullivan

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NK cell response to viral infections in beta 2-microglobulin-deficient mice, Chin Hun Tay, Raymond M. Welsh, and Randy R. Brutkiewicz

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Radiation-induced apoptosis is differentially regulated in primary B cells from normal mice and mice with the CBA/N X-linked immunodeficiency, Robert T. Woodland, Madelyn R. Schmidt, James E. Riggs, Stanley J. Korsmeyer, Annette M. Lussier, and Kathryn A. Gravel

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Protective CTL-dependent immunity and enhanced immunopathology in mice immunized by particle bombardment with DNA encoding an internal virion protein, Christopher C. Zarozinski, Ellen F. Fynan, Liisa K. Selin, Harriet L. Robinson, and Raymond M. Welsh

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Glucose transporter function is controlled by transporter oligomeric structure. A single, intramolecular disulfide promotes GLUT1 tetramerization, Ralph J. Zottola, Erin K. Cloherty, Peter E. Coderre, Antony Hansen, Daniel N. Hebert, and Anthony Carruthers

Publications from 1994

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Single mRNAs visualized by ultrastructural in situ hybridization are principally localized at actin filament intersections in fibroblasts, Gary J. Bassell, Christine M. Powers, Krishan L. Taneja, and Robert H. Singer

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Association of poly(A) mRNA with microtubules in cultured neurons, Gary J. Bassell, Robert H. Singer, and Kenneth S. Kosik

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Actin filaments and the spatial positioning of mRNAS, Gary J. Bassell, Krishan L. Taneja, Edward H. Kislauskis, Cynthia L. Sundell, Christine M. Powers, Anthony F. Ross, and Robert H. Singer

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Parathyroid-responsive modifications in the nuclear matrix of ROS 17/2.8 rat osteosarcoma cells, Joseph P. Bidwell, Andre J. Van Wijnen, Chaitali Banerjee, Edward G. Fey, Harold L. Merriman, Sheldon Penman, Janet L. Stein, Jane B. Lian, and Gary S. Stein

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Subnuclear distribution of the vitamin D receptor, Joseph P. Bidwell, Andre J. Van Wijnen, Edward G. Fey, Harold L. Merriman, Sheldon Penman, Janet L. Stein, Gary S. Stein, and Jane B. Lian

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In vivo occupancy of the vitamin D responsive element in the osteocalcin gene supports vitamin D-dependent transcriptional upregulation in intact cells, Ellen C. Breen, Andre J. Van Wijnen, Jane B. Lian, Gary S. Stein, and Janet L. Stein

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Synergistic induction of neurotensin gene transcription in PC12 cells parallels changes in AP-1 activity, Bryant Paul Bullock, Gerard P. McNeil, and Paul R. Dobner

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Evidence from 18O exchange studies for an exocyclic methylene intermediate in the reaction catalyzed by T4 deoxycytidylate hydroxymethylase, Michelle Marie Butler, Karen Lorraine Graves, and Larry W. Hardy

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Effects of mifepristone (RU-486) on heme metabolism and cytochromes P-450 in cultured chick embryo liver cells, possible implications for acute porphyria, Edward Earl Cable, Joyce A. Pepe, Susan E. Donohue, Richard W. Lambrecht, and Herbert L. Bonkovsky

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Differential effects of metalloporphyrins on messenger RNA levels of delta-aminolevulinate synthase and heme oxygenase. Studies in cultured chick embryo liver cells, Edward Earl Cable, Joyce A. Pepe, Nicholas C. Karamitsios, Richard W. Lambrecht, and Herbert L. Bonkovsky

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Dental abnormalities in the osteopetrotic rat mutation microphthalmia blanc, Matthew J. Cielinski, T. Iizuka, and Sandy C. Marks

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Neonatal reductions in osteoclast number and function account for the transient nature of osteopetrosis in the rat mutation microphthalmia blanc (mib), Matthew J. Cielinski and Sandy C. Marks

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Understanding bone cell biology requires an integrated approach: reliable opportunities to study osteoclast biology in vivo, Matthew J. Cielinski and Sandy C. Marks

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Beta-centractin: characterization and distribution of a new member of the centractin family of actin-related proteins, Sean W. Clark, Olivier Staub, Imran B. Clark, Erika L. F. Holzbaur, Bryce Mark Paschal, Richard B. Vallee, and David I. Meyer

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Replication of an osteopetrosis-inducing avian leukosis virus in fibroblasts, osteoblasts, and osteopetrotic bone, Rosalinda Gram Foster, Jane B. Lian, Gary S. Stein, and Harriet L. Robinson

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Establishment of interference in osteoblasts by an osteopetrosis-inducing avian leukosis virus, Rosalinda Gram Foster and Harriet L. Robinson

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A composite intragenic silencer domain exhibits negative and positive transcriptional control of the bone-specific osteocalcin gene: promoter and cell type requirements, Baruch Frenkel, Martin A. Montecino, Janet L. Stein, Jane B. Lian, and Gary S. Stein

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Implanted fibroblasts genetically engineered to produce brain-derived neurotrophic factor prevent 1-methyl-4-phenylpyridinium toxicity to dopaminergic neurons in the rat, David M. Frim, Tara A. Uhler, Wendy R. Galpern, M. Flint Beal, Xandra O. Breakefield, and Ole Isacson

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Kinetic and equilibrium alpha-secondary tritium isotope effects on reactions catalyzed by dCMP hydroxymethylase from bacteriophage T4, Karen Lorraine Graves and Larry W. Hardy

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Mutational activation of the STE5 gene product bypasses the requirement for G protein beta and gamma subunits in the yeast pheromone response pathway, Miriam Sarah Hasson, Dmitry B. Blinder, Jeremy Thorner, and Duane D. Jenness

Transcriptional control of the tissue-specific, developmentally regulated osteocalcin gene requires a binding motif for the Msx family of homeodomain proteins, Heidi M. Hoffmann, Katrina M. Catron, Andre J. Van Wijnen, Laura R. McCabe, Jane B. Lian, Gary S. Stein, and Janet L. Stein

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Immunopathologic mechanisms of dengue hemorrhagic fever and dengue shock syndrome, Ichiro Kurane, Alan L. Rothman, Peter G. Livingston, Sharone Green, Susan J. Gagnon, Jurand Janus, Bruce L. Innis, Suchitra Nimmannitya, Ananda Nisalak, and Francis A. Ennis

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Genomic loci of human mitogen-activated protein kinases, Li Li, Mark Allen Wysk, Fernando A. Gonzalez, and Roger J. Davis

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Nonsense-mediated mRNA decay in yeast, Stuart W. Peltz, Feng He, Ellen Marie Welch, and Allan Jacobson

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Delineation of a human histone H4 cell cycle element in vivo: the master switch for H4 gene transcription, Anna L. Ramsey-Ewing, Andre J. Van Wijnen, Gary S. Stein, and Janet L. Stein

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Yeast TAFIIS in a multisubunit complex required for activated transcription, Joseph C. Reese, Lynne Marie Apone, Scott S. Walker, Loree A. Griffin, and Michael R. Green

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Repression of ALA synthase by heme and zinc-mesoporphyrin in a chick embryo liver cell culture model of acute porphyria, Shirley M. Russo, Joyce A. Pepe, Edward Earl Cable, Richard W. Lambrecht, and Herbert L. Bonkovsky

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Localization of HIV RNA in mitochondria of infected cells: potential role in cytopathogenicity, Mohan Somasundaran, Maria L. Zapp, Lars K. Beattie, Lizhen Pang, Kevin S. Byron, Gary J. Bassell, John L. Sullivan, and Robert H. Singer