University of Massachusetts Medical School Faculty Publications

 

This collection showcases journal articles, book chapters, and other publications and presentations written by faculty and researchers at the University of Massachusetts Medical School.

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Publications from 2013

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Pulmonary function and flow-volume loop patterns in patients with tracheobronchomalacia, Adnan Majid, Andres F. Sosa, Armin Ernst, David Feller-Kopman, Erik Folch, Anup K. Singh, and Sidhu Gangadharan

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Investigation of statistical iterative reconstruction for dedicated breast CT, Andrey Makeev and Stephen J. Glick

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Estrogen receptor beta sustains epithelial differentiation by regulating prolyl hydroxylase 2 transcription, Paul Mak, Cheng Chang, Bryan M. Pursell, and Arthur M. Mercurio

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Molecular determinants of co- and post-translational N-glycosylation of type I transmembrane peptides, Heidi Malaby and William R. Kobertz

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Phylogeographic evidence of cognate recognition site patterns and transformation efficiency differences in H. pylori: theory of strain dominance, Ana Maldonado-Contreras, Shrinivasrao P. Mane, Xue-Song Zhang, Luis Pericchi, Teresa Alarcon, Monica Contreras, Bodo Linz, Martin J. Blaser, and Maria Gloria Dominguez-Bello

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SMAD regulatory networks construct a balanced immune system, Nidhi Malhotra and Joonsoo Kang

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A network of high-mobility group box transcription factors programs innate interleukin-17 production, Nidhi Malhotra, Kavitha Narayan, Ok Hyun Cho, Katelyn E. Sylvia, Catherine C. Yin, Heather J. Melichar, Medhi Rashighi, Veronique Lefebvre, John E. Harris, Leslie J. Berg, and Joonsoo Kang

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Reducing analytical variation between point-of-care and laboratory HbA1c testing, Samir Malkani, Nichole Korpi-Steiner, and Lokinendi V. Rao

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Loss of cilia suppresses cyst growth in genetic models of autosomal dominant polycystic kidney disease, Ming Ma, Xin Tian, Peter Igarashi, Gregory J. Pazour, and Stefan Somlo

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Protein translocation across the rough endoplasmic reticulum, Elisabet C. Mandon, Steven F. Trueman, and Reid Gilmore

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Releasing the brakes on a chromatin-remodeling enzyme, Benjamin J. Manning and Craig L. Peterson

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High efficiency generalized transduction in Escherichia coli O157:H7, Martin G. Marinus and Anthony R. Poteete

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Towards collaborative filtering recommender systems for tailored health communications, Benjamin M. Marlin, Roy J. Adams, Rajani S. Sadasivam, and Thomas K. Houston

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Overcoming challenges integrating patient-generated data into the clinical EHR: lessons from the CONtrolling Disease Using Inexpensive IT--Hypertension in Diabetes (CONDUIT-HID) Project, Jenna L. Marquard, Lawrence D. Garber, Barry G. Saver, Brian Amster, Michael Kelleher, and Peggy Preusse

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(De-) oiling inflammasomes, Robyn Lynn Marty-Roix and Egil Lien

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All-Cause, Cardiovascular, and Cancer Mortality Rates in Postmenopausal White, Black, Hispanic, and Asian Women With and Without Diabetes in the United States: The Women's Health Initiative, 1993-2009, Yunsheng Ma, James R. Hebert, Raji Balasubramanian, Nicole M. Wedick, Barbara V. Howard, Milagros C. Rosal, Simin Liu, Chloe E. Bird, Barbara C. Olendzki, Judith K. Ockene, Jean Wactawski-Wende, Lawrence S. Phillips, Michael J. Lamonte, Kristin L. Schneider, Lorena Garcia, Ira S. Ockene, Philip A. Merriam, Deidre M. Sepavich, Rachel H. Mackey, Karen C. Johnson, and JoAnn E. Manson

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Assessing patient-centered communication in cancer care: stakeholder perspectives, Kathleen M. Mazor, Bridget Gaglio, Larissa Nekhlyudov, Gwen L. Alexander, Azadeh Stark, Mark C. Hornbrook, Kathleen E. Walsh, Jennifer Boggs, Celeste A. Lemay, Cassandra L. Firneno, Colleen Biggins, Mary Ann Blosky, and Neeraj K. Arora

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Predictors of criminal justice involvement in severe mania, Patrick J. McCabe, Paul P. Christopher, Debra A. Pinals, and William H. Fisher

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Integrating advanced practice providers into medical critical care teams, Christine McCarthy, Nancy C. O'Rourke, and J. Mark Madison

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Memory CD4 T cell-mediated immunity against influenza A virus: more than a little helpful, K. Kai McKinstry, Richard W. Dutton, Susan L. Swain, and Tara M. Strutt

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Relationship among circulating inflammatory proteins, platelet gene expression, and cardiovascular risk, David D. McManus, Lea M. Beaulieu, Eric Mick, Kahraman Tanriverdi, Martin G. Larson, John F. Keaney Jr., Emelia J. Benjamin, and Jane E. Freedman

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Association of BP Variability with Mortality among African Americans with CKD, Ciaran J. McMullan, George L. Bakris, Robert A. Phillips, and John P. Forman

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Identification of factors that function in Drosophila salivary gland cell death during development using proteomics, Christina K. McPhee, B. M. Balgley, Charles Nelson, J. H. Hill, Yakup Batlevi, X. Fang, C. S. Lee, and Eric H. Baehrecke

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Transcriptional analysis of murine macrophages infected with different Toxoplasma strains identifies novel regulation of host signaling pathways, Mariane B. Melo, Quynh P. Nguyen, Cynthia Cordeiro, Musa A. Hassan, Ninghan Yang, Renee McKell, Emily E. Rosowski, Lindsay Julien, Vincent Butty, Marie-Laure Darde, Daniel Ajzenberg, Katherine A. Fitzgerald, Lucy H. Young, and Jeroen P. J. Saeij

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Identification of strain-specific B-cell epitopes in Trypanosoma cruzi using genome-scale epitope prediction and high-throughput immunoscreening with peptide arrays, Tiago Antonio de Oliveira Mendes, Joao Luis. Reis Cunha, Rodrigo de Almeida Lourdes, Gabriela Flavia Rodrigues Luiz, Lucas Dhom Lemos, Ana Rita dos Santos Rocha, Antonia Claudia da Camara Jacome, Lucia Maria da Cunha Galvao, Caryn Bern, Robert H. Gilman, Ricardo Toshio Fujiwara, Ricardo T. Gazzinelli, and Daniella Castanheira Bartholomeu

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All purulence is local - epidemiology and management of skin and soft tissue infections in three urban emergency departments, Chris Merritt, John P. Haran, Jacob Mintzer, Joseph Stricker, and Roland C. Merchant

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Genome-wide assessment of post-transcriptional control in the fly brain, Shaul Mezan, Reut Ashwal-Fluss, Rom Shenhav, Manuel Garber, and Sebastian Kadener

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Ahead of the curve: next generation estimators of drug resistance in malaria infections, Nicole Mideo, David A. Kennedy, Jane M. Carlton, Jeffrey A. Bailey, Jonathan J. Juliano, and Andrew F. Read

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Yeast Upf1 CH domain interacts with Rps26 of the 40S ribosomal subunit, Ei Ei Min, Bijoyita Roy, Nadia Amrani, Feng He, and Allan Jacobson

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A mutation in the stalk of the newcastle disease virus hemagglutinin-neuraminidase (HN) protein prevents triggering of the F protein despite allowing efficient HN-F complex formation, Anne M. Mirza and Ronald M. Iorio

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The Legionella pneumophila GTPase activating protein LepB accelerates Rab1 deactivation by a non-canonical hydrolytic mechanism, Ashwini K. Mishra, Claudia M. Del Campo, Robert E. Collins, Craig R. Roy, and David G. Lambright

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Nitric oxide controls the immunopathology of tuberculosis by inhibiting NLRP3 inflammasome-dependent processing of IL-1beta, Bibhuti B. Mishra, Vijay A. K. Rathinam, Gregory W. Martens, Amanda J. Martinot, Hardy Kornfeld, Katherine A. Fitzgerald, and Christopher M. Sassetti

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Inflammatory cytokine-mediated evasion of virus-induced tumors from NK cell control, Rabinarayan Mishra, Bojan Polic, Raymond M. Welsh, and Eva Szomolanyi-Tsuda

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Behavioral and neural evidence of increased attention to the bottom half of the face in deaf signers, Teresa V. Mitchell, Susan M. Letourneau, and Melissa C. T. Maslin

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Structural and thermodynamic basis of amprenavir/darunavir and atazanavir resistance in HIV-1 protease with mutations at residue 50, Seema Mittal, Rajintha M. Bandaranayake, Nancy M. King, Moses Prabu-Jeyabalan, Madhavi N. L. Nalam, Ellen A. Nalivaika, Nese Kurt Yilmaz, and Celia A. Schiffer

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Metastatic carcinoma to the thyroid gland: a single institution 20-year experience and review of the literature, Parnian Ahmadi Moghaddam, Kristine M. Cornejo, and Ashraf Khan

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Mentoring future Kenyan oncology researchers, Ann M. Moormann, Jodi Skiles, Emmanuel Koros, Fredrick Chite Asirwa, Naftali Busakhala, and Patrick Loehrer

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RIP3: a molecular switch for necrosis and inflammation, Kenta Moriwaki and Francis Ka-Ming Chan

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The association between health literacy and cancer-related attitudes, behaviors, and knowledge, Nancy S. Morris, Terry S. Field, Joann L. Wagner, Sarah L. Cutrona, Douglas W. Roblin, Bridget Gaglio, Andrew E. Williams, Paul J. K. Han, Mary E. Costanza, and Kathleen M. Mazor

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Change in health literacy over 2 years in older adults with diabetes, Nancy S. Morris, Charles D. Maclean, and Benjamin Littenberg

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Statin use and infections in Veterans with cirrhosis, Christine Motzkus-Feagans, A. L. Pakyz, S. M. Ratliff, J. S. Bajaj, and Kate L. Lapane

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Frequency and impact of intensive care unit complications on moderate-severe traumatic brain injury: early results of the Outcome Prognostication in Traumatic Brain Injury (OPTIMISM) Study, Susanne Muehlschlegel, Raphael A. Carandang, Cynthia Ouillette, Wiley R. Hall, Frederick A. Anderson Jr., and Robert J. Goldberg

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Differentiating reversible cerebral vasoconstriction syndrome with subarachnoid hemorrhage from other causes of subarachnoid hemorrhage, Susanne Muehlschlegel, Oguzhan Kursun, Mehmet A. Topcuoglu, Joshua Fok, and Aneesh B. Singhal

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Human Treg responses allow sustained recombinant adeno-associated virus-mediated transgene expression, Christian Mueller, Jeffrey D. Chulay, Bruce C. Trapnell, Margaret Humphries, Brenna Carey, Robert A. Sandhaus, Noel G. McElvaney, Louis M. Messina, Qiushi Tang, Farshid N. Rouhani, Martha Campbell-Thompson, Ann Dongtao Fu, Anthony Yachnis, David R. Knop, Guo-Jie Ye, Mark Brantly, Roberto Calcedo, Suryanarayan Somanathan, Lee P. Richman, Robert H. Vonderheide, Maigan A. Hulme, Todd M. Brusko, James M. Wilson, and Terence R. Flotte

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Impact of Hospital Teaching Intensity on Quality of Care and Patient Outcomes, Stephanie K. Mueller, Stuart R. Lipsitz, and LeRoi S. Hicks

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Ethical matters in rural integrated primary care settings, Daniel Mullin and Joseph Stenger

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Cellular stress response and innate immune signaling: integrating pathways in host defense and inflammation, Sujatha Muralidharan and Pranoti Mandrekar

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The use of alternative polyadenylation sites renders integrin beta1 (Itgb1) mRNA isoforms with differential stability during mammary gland development, Julian Naipauer, Albana Gattelli, Maria Sol Degese, Victoria Slomiansky, Eva Wertheimer, Jonathan LaMarre, Lucio H. Castilla, Martin Abba, Edith C. Kordon, and Omar A. Coso

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Sodium Acetate as a Replacement for Sodium Bicarbonate in Medical Toxicology: a Review, Mark Neavyn, Edward W. Boyer, Steven B. Bird, and Kavita Babu

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An unusual two-step control of CPEB destruction by Pin1, Morris Nechama, Chien-Ling Lin, and Joel D. Richter

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Evaluation and management of patients with isolated neutropenia, Peter E. Newburger and David C. Dale

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The role of Bruton's tyrosine kinase in the development and BCR/TLR-dependent activation of AM14 rheumatoid factor B cells, Kerstin Nundel, Patricia Busto, Michelle E. Debatis, and Ann Marshak-Rothstein

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Tolerance has its limits: how the thymus copes with infection, Claudio Nunes-Alves, Claudia Nobrega, Samuel M. Behar, and Margarida Correia-Neves

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Are monarch butterflies true navigators? The jury is still out, Karen S. Oberhauser, Orley R. Taylor, Steven M. Reppert, Hugh Dingle, Kelly R. Nail, Robert M. Pyle, and Carl Stenoien

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Telomere length dynamics in human memory T cells specific for viruses causing acute or latent infections, Joel M. O'Bryan, Marcia Woda, Mary Dawn T. Co, Anuja Mathew, and Alan Rothman

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Efficiency of bridging-sheet recruitment explains HIV-1 R5 envelope glycoprotein sensitivity to soluble CD4 and macrophage tropism, Olivia J. O'Connell, Alexander Repik, Jacqueline D. Reeves, Maria Paz Gonzalez-Perez, Briana Quitadamo, Elizabeth D. Anton, Maria J. Duenas-Decamp, Paul J. Peters, Rongheng Lin, Susan Zolla-Pazner, Davide Corti, Aaron Wallace, Shixia Wang, Xiang-Peng Kong, Shan Lu, and Paul R. Clapham

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Generation of voxelized breast phantoms from surgical mastectomy specimens, J. Michael O'Connor, Mini Das, Clay S. Dider, Mufeed Mahd, and Stephen J. Glick

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Evolution of pancreatic function during the first year in infants with cystic fibrosis, Brian P. O'Sullivan, Dawn Baker, Katherine G. Leung, George W. Reed, Susan S. Baker, and Drucy Borowitz

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Infection control in cystic fibrosis: share and share alike, Brian P. O'Sullivan and Christopher M. Sassetti

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Oncogenic cooperation between PI3K/Akt signaling and transcription factor Runx2 promotes the invasive properties of metastatic breast cancer cells, Sandhya Pande, Gillian Browne, Srivatsan Padmanabhan, Kaleem Zaidi, Jane B. Lian, Andre J. Van Wijnen, Janet L. Stein, and Gary S. Stein

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Unconventional doctoring: a medical student's reflections on total suffering, Sophia Paraschos

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AIRP best cases in radiologic-pathologic correlation: lactating adenoma, Allyson N. Parnes, Ali Akalin, Robert M. Quinlan, and Gopal R. Vijayaraghavan

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Delineating breast ductal carcinoma using combined dye-enhanced wide-field polarization imaging and optical coherence tomography, Rakesh Patel, Ashraf Khan, Michal Kamionek, Dina Kandil, Robert Quinlan, and Anna N. Yaroslavsky

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Dengue virus type 2 modulates endothelial barrier function through CD73, Chinmay Patkar, Krisanthi Giaya, and Daniel H. Libraty

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A trifluoroacetic acid-labile sulfonate protecting group and its use in the synthesis of a near-IR fluorophore, Steven M. Pauff and Stephen C. Miller

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A school nurse-delivered intervention for overweight and obese adolescents, Lori Pbert, Susan Druker, Mary Ann Gapinski, Lauren A. Gellar, Robert P. Magner, George W. Reed, Kristin L. Schneider, and Stavroula K. Osganian

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Life, redrawn: a memoir of Carl R. Woese (1928-2012), Thoru Pederson

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The persistent plausibility of protein synthesis in the nucleus: process, palimpsest or pitfall, Thoru Pederson

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Turning on a dime: the 75th anniversary of America's march against polio, Thoru Pederson

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Shocking revelations and saccharin sweetness in the study of Drosophila olfactory memory, Emmanuel Perisse, Christopher J. Burke, Wolf Huetteroth, and Scott Waddell

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Different kenyon cell populations drive learned approach and avoidance in Drosophila, Emmanuel Perisse, Yan Yin, Andrew C. Lin, Suewei Lin, Wolf Huetteroth, and Scott Waddell

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Large-scale improvement initiatives in healthcare: a scan of the literature, Rocco J. Perla, Elizabeth Bradbury, and Christina Gunther-Murphy

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Whole-patient measure of safety: using administrative data to assess the probability of highly undesirable events during hospitalization, Rocco J. Perla, Samuel F. Hohmann, and Karen Annis

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Seven propositions of the science of improvement: exploring foundations, Rocco J. Perla, Lloyd P. Provost, and Gareth J. Parry

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Nucleosome dynamics as modular systems that integrate DNA damage and repair, Craig L. Peterson and Genevieve Almouzni

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Relationship of left ventricular hypertrophy and diastolic function with cardiovascular and renal outcomes in African Americans with hypertensive chronic kidney disease, Gail E. Peterson, Tine de Backer, Gabriel Contreras, Xuelei Wang, Cynthia Kendrick, Tom Greene, Lawrence J. Appel, Otelio S. Randall, Janice Lea, Miroslaw Smogorzewski, Tudor Vagaonescu, and Robert A. Phillips

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Human immunodeficiency viruses: propagation, quantification, and storage, Paul J. Peters, Kathryn H. Richards, and Paul R. Clapham

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ACR-12 ionotropic acetylcholine receptor complexes regulate inhibitory motor neuron activity in Caenorhabditis elegans, Hilary A. Petrash, Alison Philbrook, Marian Haburcak, Belinda Barbagallo, and Michael M. Francis

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Mitochondrial damage revealed by immunoselection for ALS-linked misfolded SOD1, Sarah Pickles, Laurie Destroismaisons, Sarah L. Peyrard, Sarah Cadot, Guy A. Rouleau, Robert H. Brown Jr., Jean-Pierre Julien, Nathalie Arbour, and Christine Vande Velde

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The Missing Heritability in T1D and Potential New Targets for Prevention, Brian G. Pierce, Ryan Eberwine, Janelle A. Noble, Michael Habib, Hennady P. Shulha, Zhiping Weng, Elizabeth P. Blankenhorn, and John P. Mordes

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Outcomes in octogenarians with subdural hematomas, Julie G. Pilitsis, Britney Atwater, Daniel Warden, Gina Deck, James E. Carroll Jr., Jillian K. Smith, Sing Chau Ng, and Jennifer F. Tseng

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Pirfenidone: a novel agent for the treatment of idiopathic pulmonary fibrosis, Jason Potts and Dinesh Yogaratnam

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Utilization of morning report by acute care surgery teams: results from a qualitative study, Patricia L. Pringle, Courtney E. Collins, and Heena Santry

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Deep brain stimulation, Andrzej W. Przybyszewski

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Contemporary trends in necrotizing soft-tissue infections in the United States, Charles M. Psoinos, Julie M. Flahive, Joshua J. Shaw, YouFu Li, Sing Chau Ng, Jennifer F. Tseng, and Heena P. Santry

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Acetylation of conserved lysines in bovine papillomavirus E2 by p300, Edward J. Quinlan, Sara P. Culleton, Shwu-Yuan Wu, Cheng-Ming Chiagn, and Elliot J. Androphy

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NKp30 enables NK cells to act naturally with fungi, Jessica Quintin and Stuart M. Levitz

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Is routine intraoperative cholangiogram necessary in the twenty-first century? A national view, Elizaveta Ragulin Coyne, Elan R. Witkowski, Zeling Chau, Sing Chau Ng, Heena P. Santry, Mark P. Callery, Shimul A. Shah, and Jennifer F. Tseng

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Coexisting intrarenal arteriovenous and caliceovenous fistulae after percutaneous nephrolithotomy: Case report and literature review, Neeraj Rastogi, Walter Zawacki, and Herlen Alencar

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Variations in tobacco control in National Dental PBRN practices: the role of patient and practice factors, Midge N. Ray, Jeroan J. Allison, Heather L. Coley, Jessica H. Williams, Connie L. Kohler, Gregg H. Gilbert, Joshua S. Richman, Catarina I. Kiefe, Rajani S. Sadasivam, Thomas K. Houston, and National DPBRN Collaborative Group

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Impact of diabetes and smoking on mortality in tuberculosis, George W. Reed, Hongjo choi, So Young Lee, Myungsun Lee, Youngran Kim, Hyemi Park, Jongseok Lee, Xin Zhan, Hyeungseok Kang, SooHee Hwang, Matthew Carroll, Ying Cai, Sang-Nae Cho, Clifton E. Barry III, Laura E. Via, and Hardy Kornfeld

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Drosophila Myc integrates multiple signaling pathways to regulate intestinal stem cell proliferation during midgut regeneration, Fangfang Ren, Qing Shi, Yongbin Chen, Alice Jiang, Y. Tony Ip, Huaqi Jiang, and Jin Jiang

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DNA Replication Timing, Nicholas R. Rhind and David M. Gilbert

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Granulocyte colony-stimulating factor in patients with acute ischemic stroke: results of the AX200 for Ischemic Stroke trial, E. Bernd Ringelstein, Vincent Thijs, Bo Norrving, Angel Chamorro, Franz Aichner, Martin Grond, Jeff Saver, Rico Laage, Armin Schneider, Frank Rathgeb, Gerhard Vogt, Gabriele Charisse, Jochen B. Fiebach, Stefan Schwab, Wolf R. Schabitz, Rainer Kollmar, Marc Fisher, Miroslav Brozman, David Skoloudik, Franz Gruber, Joaquin Serena Leal, Roland Veltkamp, Martin Kohrmann, and Jorg Berrouschot

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The normalcy of dormancy: common themes in microbial quiescence, Emily S. C. Rittershaus, Seung-Hun Baek, and Christopher M. Sassetti

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Teaching health care students about disability within a cultural competency context, Kenneth L. Robey, Paula M. Minihan, Linda M. Long-Bellil, Joan Earle Hahn, John G. Reiss, and Gary E. Eddey

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Derivation and validation of a practical risk score for prediction of mortality after open repair of ruptured abdominal aortic aneurysms in a US regional cohort and comparison to existing scoring systems, William P. Robinson III, Andres Schanzer, YouFu Li, Philip P. Goodney, Brian W. Nolan, Mohammad H. Eslami, Jack L. Cronenwett, and Louis M. Messina

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Uric acid as a danger signal in gout and its comorbidities, Kenneth L. Rock, Hiroshi Kataoka, and Jiann-Jyh Lai

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Telephone care coordination for smokers in VA mental health clinics: protocol for a hybrid type-2 effectiveness-implementation trial, Erin Rogers, Senaida Fernandez, Colleen Gillespie, David A. Smelson, Hildi J. Hagedorn, Brian Elbel, David Kalman, Alfredo Axtmayer, Karishma Kurowski, and Scott E. Sherman

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Analyses of the effects of all ubiquitin point mutants on yeast growth rate, Benjamin P. Roscoe, Kelly M. Thayer, Konstantin B. Zeldovich, David Fushman, and Daniel N. A. Bolon