UMass Chan Medical School Faculty Publications
Title
UMMS Affiliation
Program in Bioinformatics and Integrative Biology
Publication Date
2020-07-29
Document Type
Article
Disciplines
Bioinformatics | Computational Biology | Genetics | Genomics
Abstract
The Encylopedia of DNA Elements (ENCODE) Project launched in 2003 with the long-term goal of developing a comprehensive map of functional elements in the human genome. These included genes, biochemical regions associated with gene regulation (for example, transcription factor binding sites, open chromatin, and histone marks) and transcript isoforms. The marks serve as sites for candidate cis-regulatory elements (cCREs) that may serve functional roles in regulating gene expression(1). The project has been extended to model organisms, particularly the mouse. In the third phase of ENCODE, nearly a million and more than 300,000 cCRE annotations have been generated for human and mouse, respectively, and these have provided a valuable resource for the scientific community.
Keywords
Epigenetics, Epigenomics, Genome, Transcriptomics
Rights and Permissions
© The Author(s) 2020. Open Access: This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
DOI of Published Version
10.1038/s41586-020-2449-8
Source
ENCODE Project Consortium, Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. Perspectives on ENCODE. Nature. 2020 Jul;583(7818):693-698. doi: 10.1038/s41586-020-2449-8. Epub 2020 Jul 29. PMID: 32728248; PMCID: PMC7410827. Link to article on publisher's site
Related Resources
Journal/Book/Conference Title
Nature
PubMed ID
32728248
Repository Citation
ENCODE Project Consortium, Snyder MP, Moore JE, Weng Z. (2020). Perspectives on ENCODE. UMass Chan Medical School Faculty Publications. https://doi.org/10.1038/s41586-020-2449-8. Retrieved from https://escholarship.umassmed.edu/faculty_pubs/1805
Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 License.
Included in
Bioinformatics Commons, Computational Biology Commons, Genetics Commons, Genomics Commons
Comments
Full author list omitted for brevity. For the full list of authors, see article.