Research Datasets
This collection showcases research datasets and papers in the eScholarship@UMMS repository that include research data generated by the UMass Medical School research community. Ensuring full access to and reuse of research data facilitates the scientific process; see the Open Data & Data Sharing Library Guide for more information.
Publications from 2019
Data from: The Institutional Repository Landscape in Medical Schools and Academic Health Centers: A 2018 Snapshot View and Analysis, Daniel G. Kipnis, Ramune K. Kubilius, and Lisa A. Palmer
Understanding the Role of Prdm12b in Zebrafish Development, Ozge Yildiz
Publications from 2018
Data from: Tobacco smoke exposure is an independent predictor of vitamin D deficiency in US children, Benjamin U. Nwosu and Philip Kum-Nji
Data from: Children with type 1 diabetes who experienced a honeymoon phase had significantly lower LDL cholesterol 5 years after diagnosis, Benjamin U. Nwosu, Bo Zhang, Sanaa S. Ayyoub, Stephanie Choi, Tony R. Villalobos-Ortiz, Laura C. Alonso, and Bruce A. Barton
Publications from 2017
Molecular Players in Preserving Excitatory-Inhibitory Balance in the Brain, Wenjie Mao
Data from: A Predictive Model for Lack of Partial Clinical Remission in New-onset Pediatric Type 1 Diabetes, Katherine R. Marino, Rachel L. Lundberg, Aastha Jasrotia, Louise S. Maranda, Michael J. Thompson, Bruce A. Barton, Laura C. Alonso, and Benjamin U. Nwosu
Publications from 2016
Temporal Organization of Behavioral States through Local Neuromodulation in C. elegans, Navonil Banerjee
Data from: Vitamin D Status in Pediatric Irritable Bowel Syndrome, Benjamin U. Nwosu, Louise S. Maranda, and Ninfa Candela
Publications from 2015
Data from: A Higher Activation Threshold of Memory CD8+ T Cells Has a Fitness Cost That Is Modified by TCR Affinity during Tuberculosis, Stephen M. Carpenter, Claudio Nunes-Alves, Matthew G. Booty, Sing Sing Way, and Samuel M. Behar
ATP-Dependent Heterochromatin Remodeling: A Dissertation, Benjamin J. Manning
Data from: Human and Murine Clonal CD8+ T Cell Expansions Arise during Tuberculosis Because of TCR Selection, Claudio Nunes-Alves, Matthew G. Booty, Stephen Carpenter, Alissa C. Rothchild, Constance J. Martin, Danielle Desjardins, Katherine Steblenko, Henrik Kloverpris, Rajhmun Madansein, Duran Ramsuran, Alasdair Leslie, Margarida Correia-Neves, and Samuel M. Behar
Data from: A Randomized, Double-Blind, Placebo-Controlled Trial of Adjunctive Metformin Therapy in Overweight/Obese Youth with Type 1 Diabetes, Benjamin U. Nwosu, Louise Maranda, Karen Cullen, Lisa Greenman, Jody Fleshman, Nancy McShea, Bruce A. Barton, and Mary M. Lee
Data from: The Cardiovascular Effects of Adjunctive Metformin Therapy in Overweight/obese Youth with Type 1 Diabetes: A Randomized, Double-Blind, Placebo-Controlled Trial, Benjamin U. Nwosu, Louise S. Maranda, Karen Cullen, Lisa Greenman, Jody Fleshman, Nancy McShea, Bruce A. Barton, and Mary M. Lee
Advancements in the Synthesis and Application of Near-Infrared Imaging Reagents: A Dissertation, Steven M. Pauff
Publications from 2014
Neural Orchestration of the C. elegans Escape Response: A Dissertation, Christopher M. Clark
Direct interactions promote eviction of the Sir3 heterochromatin protein by the SWI/SNF chromatin remodeling enzyme, Benjamin J. Manning and Craig L. Peterson
Data from: The Effects of Vitamin D Supplementation on Hepatic Dysfunction, Vitamin D Status, and Glycemic Control in Children and Adolescents with Vitamin D Deficiency and Either Type 1 or Type 2 Diabetes Mellitus, Benjamin U. Nwosu and Louise S. Maranda
Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation, Benjamin P. Roscoe
Data from: The Vitamin D Status in Inflammatory Bowel Disease, Lauren Veit, Louise S. Maranda, Jay G. Fong, and Benjamin U. Nwosu
Approaches and Considerations Towards a Safe and Effective Adeno-Associated Virus Mediated Therapeutic Intervention for GM1-Gangliosidosis: A Dissertation, Cara M. Weismann
Publications from 2013
The Role of Ion Channels in Coordinating Neural Circuit Activity in Caenorhabditis elegans: A Dissertation, Jennifer K. Pirri
Data from: Lactose Intolerance: Lack of Evidence for Short Stature or Vitamin D Deficiency in Prepubertal Children, Nithya Setty-Shah, Louise S. Maranda, Ninfa Candela, Jay G. Fong, Idris Dahod, Alan D. Rogol, and Benjamin U. Nwosu
Lactose Intolerance: Lack of Evidence for Short Stature or Vitamin D Deficiency in Prepubertal Children, Nithya Setty-Shah, Louise S. Maranda, Ninfa Candela, Jay G. Fong, Idris Dahod, Alan D. Rogol, and Benjamin U. Nwosu
Publications from 2012
Gene Expression and Profiling of Human Islet Cell Subtypes: A Master’s Thesis, David M. Blodgett
An Assessment of Needed Competencies to Promote the Data Curation and Management Librarianship of Health Sciences and Science and Technology Librarians in New England, Andrew Creamer, Myrna E. Morales, Javier Crespo, Donna Kafel, and Elaine R. Martin
Undulating Toe Flexion Sign in Brain Death, Maria Dolgovin, Shany David, and Cara E. Harth
Non-canonical TAF complexes regulate active promoters in human embryonic stem cells, Glenn A. Maston, Lihua Julie Zhu, Lynn Chamberlain, Ling Lin, Minggang Fang, and Michael R. Green
Publications from 2011
Assessment of health sciences and science and technology librarian e-science educational needs to develop an e-science web portal for librarians, Andrew Creamer, Myrna E. Morales, Javier Crespo, Donna Kafel, and Elaine Russo Martin
Identification of a Command Neuron Directing the Expression of Feeding Behavior in Drosophila melanogaster: A Dissertation, Thomas F. Flood
Table II: Baseline Values of Primary and Secondary Outcomes for Placebo and Botox Groups, Michael K. Flynn
Focused Outreach Evaluation Report: Providence RI, and Western Maine Health District, Sabrina Kurtz-Rossi and National Network of Libraries of Medicine New England Region
Chromosome-Biased Binding and Function of C. elegans DRM Complex, and Its Role in Germline Sex-Silencing: A Dissertation, Tomoko M. Tabuchi
Publications from 2010
Sequence Determinants of the Folding Free-Energy Landscape of beta alpha-Repeat Proteins: A Dissertation, Sagar V. Kathuria
Publications from 2009
Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung, Jeffrey D. Gawronski, Sandy M. S. Wong, Georgia Giannoukos, Doyle V. Ward, and Brian J. Akerley
A Lilt of Finland in Worcester, Massachusetts: A Case of Foreign Accent Syndrome, Richard P. Goddeau Jr. and Ann L. Mitchell
A Multiparameter Network Reveals Extensive Divergence Between C. elegans bHLH Transcription Factors: A Dissertation, Christian A. Grove
Study of the Function and Dynamics of Myosin II and Actin in Cytokinesis: A Dissertation, Mian Zhou
Analysis of tarantula skeletal muscle protein sequences and identification of transcriptional isoforms, Jingui Zhu, Yongqiao Sun, Fa-Qing Zhao, Jun Hu, Roger W. Craig, and Songnian Hu
Publications from 2008
Medical Librarians’ Uses and Perceptions of Social Tagging, Cecile Bianco
1. HC_001, Child and Adolescent NeuroDevelopment Initiative
31. BPDwoPsy_031, Child and Adolescent NeuroDevelopment Initiative
84. SS_084, Child and Adolescent NeuroDevelopment Initiative
A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity, Natalia Julia Martinez, Maria C. Ow, M. Inmaculada Barrasa, Molly Hammell, Reynaldo Sequerra, Lynn Doucette-Stamm, Frederick P. Roth, Victor R. Ambros, and Albertha J. M. Walhout
Digitizing Dissertations for the eScholarship@UMMS Institutional Repository, Mary E. Piorun and Lisa A. Palmer
Publications from 2007
Data from: PTC124 Targets Genetic Disorders Caused by Nonsense Mutations, Allan Jacobson, Phyllis Spatrick, and Feng He
Hospital Library Promotion Toolkit, NN/LM NER Regional Advisory Council, Hospital Library Subcommittee
Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network, Vanessa Vermeirssen, M. Inmaculada Barrasa, Cesar A. Hidalgo, Jenny Aurielle B. Babon, Reynaldo Sequerra, Lynn Doucette-Stamm, Albert-Laszlo Barabasi, and Albertha J. M. Walhout
Publications from 2006
A gene-centered C. elegans protein-DNA interaction network, Bart Deplancke, Arnab Mukhopadhyay, Wanyuan Ao, Ahmed M. Elewa, Christian A. Grove, Natalia Julia Martinez, Reynaldo Sequerra, Lynn Doucette-Stamm, John S. Reece-Hoyes, Ian A. Hope, Heidi A. Tissenbaum, Susan E. Mango, and Albertha J. M. Walhout
Anatomy of a Digitization Project: Dissecting the Process, Mary E. Piorun and Lisa A. Palmer
Publications from 2005
Functions of the Cdc14-Family Phosphatase Clp1p in the Cell Cycle Regulation of Schizosaccharomyces pombe: A Dissertation, Susanne Trautmann
Publications from 2004
A gateway-compatible yeast one-hybrid system, Bart Deplancke, Denis Dupuy, Marc Vidal, and Albertha J. M. Walhout
Novel Insights into Schwann Cell Dynamics in Peripheral Nervous System Myelination: a dissertation, Cheryl Lynn Gatto
Publications from 2003
Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast, Feng He, Xiangrui Li, Phyllis Spatrick, Ryan Casillo, Shuyun Dong, and Allan Jacobson