Research Data and Datasets

 

This collection in eScholarship@UMMS provides public access and long-term storage for research data and datasets generated by the UMass Medical School (UMMS) research community. UMMS researchers who wish to archive and share their datasets may deposit research data online directly, or contact for assistance with the submission process.

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Data from 2019

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TRACE-CORE Dataset on Religious Practices and Long-Term Survival after Hospital Discharge for an Acute Coronary Syndrome, Hawa O. Abu, Kate L. Lapane, Molly E. Waring, Christine M. Ulbricht, Randolph S. Devereaux, David D. McManus, Jeroan J. Allison, Catarina I. Kiefe, and Robert J. Goldberg

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Data from: The Institutional Repository Landscape in Medical Schools and Academic Health Centers: A 2018 Snapshot View and Analysis, Daniel G. Kipnis, Lisa A. Palmer, and Ramune K. Kubilius

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Understanding the Role of Prdm12b in Zebrafish Development, Ozge Yildiz

Data from 2018

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Data from: Tobacco smoke exposure is an independent predictor of vitamin D deficiency in US children, Benjamin U. Nwosu and Philip Kum-Nji

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Data from: Children with type 1 diabetes who experienced a honeymoon phase had significantly lower LDL cholesterol 5 years after diagnosis, Benjamin U. Nwosu, Bo Zhang, Sanaa S. Ayyoub, Stephanie Choi, Tony R. Villalobos-Ortiz, Laura C. Alonso, and Bruce A. Barton

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Fluorescent Visualization of Cellular Proton Fluxes, Lejie Zhang

Data from 2017

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Molecular Players in Preserving Excitatory-Inhibitory Balance in the Brain, Wenjie Mao

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Data from: A Predictive Model for Lack of Partial Clinical Remission in New-onset Pediatric Type 1 Diabetes, Katherine R. Marino, Rachel L. Lundberg, Aastha Jasrotia, Louise S. Maranda, Michael J. Thompson, Bruce A. Barton, Laura C. Alonso, and Benjamin U. Nwosu

Data from 2016

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Temporal Organization of Behavioral States through Local Neuromodulation in C. elegans, Navonil Banerjee

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Data from: Vitamin D Status in Pediatric Irritable Bowel Syndrome, Benjamin U. Nwosu, Louise S. Maranda, and Ninfa Candela

Data from 2015

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Data from: A Higher Activation Threshold of Memory CD8+ T Cells Has a Fitness Cost That Is Modified by TCR Affinity during Tuberculosis, Stephen M. Carpenter, Claudio Nunes-Alves, Matthew G. Booty, Sing Sing Way, and Samuel M. Behar

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ATP-Dependent Heterochromatin Remodeling: A Dissertation, Benjamin J. Manning

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Data from: Human and Murine Clonal CD8+ T Cell Expansions Arise during Tuberculosis Because of TCR Selection, Claudio Nunes-Alves, Matthew G. Booty, Stephen Carpenter, Alissa C. Rothchild, Constance J. Martin, Danielle Desjardins, Katherine Steblenko, Henrik Kloverpris, Rajhmun Madansein, Duran Ramsuran, Alasdair Leslie, Margarida Correia-Neves, and Samuel M. Behar

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Data from: A Randomized, Double-Blind, Placebo-Controlled Trial of Adjunctive Metformin Therapy in Overweight/Obese Youth with Type 1 Diabetes, Benjamin U. Nwosu, Louise Maranda, Karen Cullen, Lisa Greenman, Jody Fleshman, Nancy McShea, Bruce A. Barton, and Mary M. Lee

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Data from: The Cardiovascular Effects of Adjunctive Metformin Therapy in Overweight/obese Youth with Type 1 Diabetes: A Randomized, Double-Blind, Placebo-Controlled Trial, Benjamin U. Nwosu, Louise S. Maranda, Karen Cullen, Lisa Greenman, Jody Fleshman, Nancy McShea, Bruce A. Barton, and Mary M. Lee

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Advancements in the Synthesis and Application of Near-Infrared Imaging Reagents: A Dissertation, Steven M. Pauff

Data from 2014

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Neural Orchestration of the C. elegans Escape Response: A Dissertation, Christopher M. Clark

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Direct interactions promote eviction of the Sir3 heterochromatin protein by the SWI/SNF chromatin remodeling enzyme, Benjamin J. Manning and Craig L. Peterson

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Data from: The Effects of Vitamin D Supplementation on Hepatic Dysfunction, Vitamin D Status, and Glycemic Control in Children and Adolescents with Vitamin D Deficiency and Either Type 1 or Type 2 Diabetes Mellitus, Benjamin U. Nwosu and Louise S. Maranda

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Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation, Benjamin P. Roscoe

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Data from: The Vitamin D Status in Inflammatory Bowel Disease, Lauren Veit, Louise S. Maranda, Jay G. Fong, and Benjamin U. Nwosu

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Approaches and Considerations Towards a Safe and Effective Adeno-Associated Virus Mediated Therapeutic Intervention for GM1-Gangliosidosis: A Dissertation, Cara M. Weismann

Data from 2013

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The Role of Ion Channels in Coordinating Neural Circuit Activity in Caenorhabditis elegans: A Dissertation, Jennifer K. Pirri

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Data from: Lactose Intolerance: Lack of Evidence for Short Stature or Vitamin D Deficiency in Prepubertal Children, Nithya Setty-Shah, Louise S. Maranda, Ninfa Candela, Jay G. Fong, Idris Dahod, Alan D. Rogol, and Benjamin U. Nwosu

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Lactose Intolerance: Lack of Evidence for Short Stature or Vitamin D Deficiency in Prepubertal Children, Nithya Setty-Shah, Louise S. Maranda, Ninfa Candela, Jay G. Fong, Idris Dahod, Alan D. Rogol, and Benjamin U. Nwosu

Data from 2012

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Gene Expression and Profiling of Human Islet Cell Subtypes: A Master’s Thesis, David M. Blodgett

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An Assessment of Needed Competencies to Promote the Data Curation and Management Librarianship of Health Sciences and Science and Technology Librarians in New England, Andrew Creamer, Myrna E. Morales, Javier Crespo, Donna Kafel, and Elaine R. Martin

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Undulating Toe Flexion Sign in Brain Death, Maria Dolgovin, Shany David, and Cara E. Harth

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Non-canonical TAF complexes regulate active promoters in human embryonic stem cells, Glenn A. Maston, Lihua Julie Zhu, Lynn Chamberlain, Ling Lin, Minggang Fang, and Michael R. Green

Data from 2011

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Assessment of health sciences and science and technology librarian e-science educational needs to develop an e-science web portal for librarians, Andrew Creamer, Myrna E. Morales, Javier Crespo, Donna Kafel, and Elaine Russo Martin

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Identification of a Command Neuron Directing the Expression of Feeding Behavior in Drosophila melanogaster: A Dissertation, Thomas F. Flood

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Table II: Baseline Values of Primary and Secondary Outcomes for Placebo and Botox Groups, Michael K. Flynn

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Focused Outreach Evaluation Report: Providence RI, and Western Maine Health District, Sabrina Kurtz-Rossi and National Network of Libraries of Medicine New England Region

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Chromosome-Biased Binding and Function of C. elegans DRM Complex, and Its Role in Germline Sex-Silencing: A Dissertation, Tomoko M. Tabuchi

Data from 2010

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Sequence Determinants of the Folding Free-Energy Landscape of beta alpha-Repeat Proteins: A Dissertation, Sagar V. Kathuria

Data from 2009

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Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung, Jeffrey D. Gawronski, Sandy M. S. Wong, Georgia Giannoukos, Doyle V. Ward, and Brian J. Akerley

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A Lilt of Finland in Worcester, Massachusetts: A Case of Foreign Accent Syndrome, Richard P. Goddeau Jr. and Ann L. Mitchell

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A Multiparameter Network Reveals Extensive Divergence Between C. elegans bHLH Transcription Factors: A Dissertation, Christian A. Grove

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Study of the Function and Dynamics of Myosin II and Actin in Cytokinesis: A Dissertation, Mian Zhou

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Analysis of tarantula skeletal muscle protein sequences and identification of transcriptional isoforms, Jingui Zhu, Yongqiao Sun, Fa-Qing Zhao, Jun Hu, Roger W. Craig, and Songnian Hu

Data from 2008

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Medical Librarians’ Uses and Perceptions of Social Tagging, Cecile Bianco

1. HC_001, Child and Adolescent NeuroDevelopment Initiative

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31. BPDwoPsy_031, Child and Adolescent NeuroDevelopment Initiative

84. SS_084, Child and Adolescent NeuroDevelopment Initiative

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A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity, Natalia Julia Martinez, Maria C. Ow, M. Inmaculada Barrasa, Molly Hammell, Reynaldo Sequerra, Lynn Doucette-Stamm, Frederick P. Roth, Victor R. Ambros, and Albertha J. M. Walhout

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Digitizing Dissertations for the eScholarship@UMMS Institutional Repository, Mary E. Piorun and Lisa A. Palmer

Data from 2007

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Data from: PTC124 Targets Genetic Disorders Caused by Nonsense Mutations, Allan Jacobson, Phyllis Spatrick, and Feng He

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Hospital Library Promotion Toolkit, NN/LM NER Regional Advisory Council, Hospital Library Subcommittee

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Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network, Vanessa Vermeirssen, M. Inmaculada Barrasa, Cesar A. Hidalgo, Jenny Aurielle B. Babon, Reynaldo Sequerra, Lynn Doucette-Stamm, Albert-Laszlo Barabasi, and Albertha J. M. Walhout

Data from 2006

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A gene-centered C. elegans protein-DNA interaction network, Bart Deplancke, Arnab Mukhopadhyay, Wanyuan Ao, Ahmed M. Elewa, Christian A. Grove, Natalia Julia Martinez, Reynaldo Sequerra, Lynn Doucette-Stamm, John S. Reece-Hoyes, Ian A. Hope, Heidi A. Tissenbaum, Susan E. Mango, and Albertha J. M. Walhout

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Anatomy of a Digitization Project: Dissecting the Process, Mary E. Piorun and Lisa A. Palmer

Data from 2005

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Functions of the Cdc14-Family Phosphatase Clp1p in the Cell Cycle Regulation of Schizosaccharomyces pombe: A Dissertation, Susanne Trautmann

Data from 2004

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A gateway-compatible yeast one-hybrid system, Bart Deplancke, Denis Dupuy, Marc Vidal, and Albertha J. M. Walhout

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Novel Insights into Schwann Cell Dynamics in Peripheral Nervous System Myelination: a dissertation, Cheryl Lynn Gatto

Data from 2003

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Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast, Feng He, Xiangrui Li, Phyllis Spatrick, Ryan Casillo, Shuyun Dong, and Allan Jacobson