Organization of the mitotic chromosome
Program in Systems Biology; Department of Biochemistry and Molecular Pharmacology
Computational Biology | Systems Biology
Mitotic chromosomes are among the most recognizable structures in the cell, yet for over a century their internal organization remains largely unsolved. We applied chromosome conformation capture methods, 5C and Hi-C, across the cell cycle and revealed two distinct three-dimensional folding states of the human genome. We show that the highly compartmentalized and cell type-specific organization described previously for nonsynchronous cells is restricted to interphase. In metaphase, we identified a homogenous folding state that is locus-independent, common to all chromosomes, and consistent among cell types, suggesting a general principle of metaphase chromosome organization. Using polymer simulations, we found that metaphase Hi-C data are inconsistent with classic hierarchical models and are instead best described by a linearly organized longitudinally compressed array of consecutive chromatin loops.
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Citation: Naumova N, Imakaev M, Fudenberg G, Zhan Y, Lajoie BR, Mirny LA, Dekker J. Organization of the mitotic chromosome. Science. 2013 Nov 22;342(6161):948-53. doi: 10.1126/science.1236083. Link to article on publisher's site
Science (New York, N.Y.)
Naumova, Natalia; Imakaev, Maxim; Fudenberg, Geoffrey; Zhan, Ye; Lajoie, Bryan R.; Mirny, Leonid A.; and Dekker, Job, "Organization of the mitotic chromosome" (2013). Program in Systems Biology Publications and Presentations. 36.