Most Recent Additions*

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An integrated encyclopedia of DNA elements in the human genome
Bryan R. Lajoie, Amartya Sanyal, Job Dekker, Gaurav Jain, Xianjun Dong, Melissa Greven, Xinying Lin, Jie Wang, Troy W. Whitfield, Jiali Zhuang, Zhiping Weng, Hualin S. Xi, and Ewan Birney

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Functional analysis of transcription factor binding sites in human promoters
Troy W. Whitfield, Jie Wang, Patrick J. Collins, E. Christopher Partridge, Shelley Force Aldred, Nathan D. Trinklein, Richard M. Myers, and Zhiping Weng

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Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Jie Wang, Jiali Zhuang, Sowmya Iyer, Xinying Lin, Troy W. Whitfield, Melissa Greven, Brian G. Pierce, Xianjun Dong, Anshul Kundaje, Yong Cheng, Oliver J. Rando, Ewan Birney, Richard M. Myers, William S. Noble, Michael Snyder, and Zhiping Weng

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Rapid reassortment of internal genes in avian influenza A(H7N9) virus
Liangsheng Zhang, Zhenguo Zhang, and Zhiping Weng

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Substitution rates of the internal genes in the novel avian H7N9 influenza virus
Liangsheng Zhang, Zhenguo Zhang, Zhiping Weng, and Weifeng Shi

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Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions
Rocco Moretti, Sarel J. Fleishman, Rudi Agius, Mieczyslaw Torchala, Paul A. Bates, Panagiotis L. Kastritis, Joao P.G.L.M Rodrigues, Mikael Trellet, Alexandre M.J.J. Bonvin, Meng Cui, Brian G. Pierce, Howook Hwang, Thom Vreven, and Zhiping Weng

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Evaluating template-based and template-free protein-protein complex structure prediction
Thom Vreven, Howook Hwang, Brian G. Pierce, and Zhiping Weng

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Blind prediction of interfacial water positions in CAPRI
Marc F. Lensink, Iain H. Moal, Paul A. Bates, Panagiotis L. Kastritis, Adrien S.J. Melquiond, Ezgi Karaca, Christophe Schmitz, Marc van Dijk, Alexandre M.J.J. Bonvin, Miriam Eisenstein, Brian G. Pierce, Howook Hwang, Thom Vreven, and Zhiping Weng

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Backbone flexibility of CDR3 and immune recognition of antigens
Jaafar N. Haidar, Wei Zhu, Jacqueline Lypowy, Brian G. Pierce, Amtul Bari, Kris Persaud, Xenia Luna, Marshall Snavely, Dale Ludwig, and Zhiping Weng

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Endogenous U2.U5.U6 snRNA complexes in S. pombe are intron lariat spliceosomes
Weijun Chen, Hennady P. Shulha, Ami Ashar-Patel, Jing Yang, Karin M. Green, Charles C. Query, Nicholas R. Rhind, Zhiping Weng, and Melissa J. Moore

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ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers
Brian G. Pierce, Kevin Wiehe, Howook Hwang, Bong-Hyun Kim, Thom Vreven, and Zhiping Weng

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Antisense piRNA amplification, but not piRNA production or nuage assembly, requires the Tudor-domain protein Qin
Zhao Zhang, Birgit S. Koppetsch, Jie Wang, Cindy Tipping, Zhiping Weng, William E. Theurkauf, and Phillip D. Zamore

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TEMP: a computational method for analyzing transposable element polymorphism in populations
Jiali Zhuang, Jie Wang, William E. Theurkauf, and Zhiping Weng

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Crystal structure of Streptococcus pyogenes EndoS, an immunomodulatory endoglycosidase specific for human IgG antibodies
Beatriz Trastoy, Joseph V. Lomino, Brian G. Pierce, Lester G. Carter, Sebastian Gunther, John P. Giddens, Greg A. Snyder, Thomas M. Weiss, Zhiping Weng, Lai-Xi Wang, and Eric J. Sundberg

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The HP1 homolog rhino anchors a nuclear complex that suppresses piRNA precursor splicing
Zhao Zhang, Jie Wang, Nadine McGinnis-Schultz, Fan Zhang, Swapnil S. Parhad, Shikui Tu, Thom Vreven, Phillip D. Zamore, Zhiping Weng, and William E. Theurkauf

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Regulation of histone H3K4 methylation in brain development and disease
Erica Shen, Hennady P. Shulha, Zhiping Weng, and Schahram Akbarian

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Principles of regulatory information conservation between mouse and human
Yong Cheng, Zhihai Ma, Bong-Hyun Kim, Weisheng Wu, Philip Cayting, Alan P. Boyle, Vasavi Sundaram, Xiaoyun Xing, Nergiz Dogan, Jingjing Li, Ghia Euskirchen, Shin Lin, Yiing Lin, Axel Visel, Trupti Kawli, Xinqiong Yang, Dorrelyn Patacsil, Cheryl A. Keller, Belinda Giardine, Anshul Kundaje, Ting Wang, Len A. Pennacchio, Zhiping Weng, Ross C. Hardison, and Michael P. Snyder

*Updated as of 07/06/15.