Publications from 2012
Cytoplasmic polyadenylation element binding protein deficiency stimulates PTEN and Stat3 mRNA translation and induces hepatic insulin resistance, Ilya M. Alexandrov, Maria Ivshina, Dae Young Jung, Randall H. Friedline, Hwi Jin Ko, Mei Xu, Bryan O'Sullivan-Murphy, Rita Bortell, Yen-Tsung Huang, Fumihiko Urano, Jason K. Kim, and Joel D. Richter
Paternal RLIM/Rnf12 Is a Survival Factor for Milk-Producing Alveolar Cells, Baowei Jiao, Hong Ma, Maxim N. Shokhirev, Alexander Drung, Qin Yang, JongDae Shin, Shaolei Lu, Meg Byron, Sundeep Kalantry, Arthur M. Mercurio, Jeanne B. Lawrence, Alexander Hoffmann, and Ingolf Bach
Analysis of Gal4-directed transcription activation using Tra1 mutants selectively defective for interaction with Gal4, Ling Lin, Lynn Chamberlain, Lihua Julie Zhu, and Michael R. Green
miR-221 is required for endothelial tip cell behaviors during vascular development, Stefania Nicoli, Carl-Philipp Knyphausen, Lihua Julie Zhu, Abirami Lakshmanan, and Nathan D. Lawson
Regulation of CHMP4/ESCRT-III function in human immunodeficiency virus type 1 budding by CC2D1A, Yoshiko Usami, Sergei Popov, Eric R. Weiss, Christie Vriesema-Magnuson, Arianna Calistri, and Heinrich G. Gottlinger
Chondrolectin mediates growth cone interactions of motor axons with an intermediate target, Zhen Zhong, Jochen Ohnmacht, Michell M. Reimer, Ingolf Bach, Thomas C. Becker, and Catherina G. Becker
Publications from 2011
Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites, Aaron W. Aday, Lihua Julie Zhu, Abirami Lakshmanan, Jie Wang, and Nathan D. Lawson
The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules, Davide Bau, Amartya Sanyal, Bryan R. Lajoie, Emidio Capriotti, Meg Byron, Jeanne B. Lawrence, Job Dekker, and Marc A. Marti-Renom
A stele-enriched gene regulatory network in the Arabidopsis root, Siobhan M. Brady, Lifang Zhang, Molly Megraw, Natalia Julia Martinez, Eric Jiang, Charles S. Yi, Weilin Liu, Anna Zeng, Mallorie Taylor-Teeples, Dahae Kim, Sebastian Ahnert, Uwe Ohler, Doreen Ware, Albertha J. M. Walhout, and Philip N. Benfey
A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity, Ryan G. Christensen, Gupta Ankit, Zheng Zuo, Lawrence A. Schriefer, Scot A. Wolfe, and Gary D. Stormo
The cilia protein IFT88 is required for spindle orientation in mitosis, Benedicte Delaval, Alison Bright, Nathan D. Lawson, and Stephen J. Doxsey
Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants, Federico De Masi, Christian A. Grove, Anastasia Vedenko, Andreu Alibés, Stephen S. Gisselbrecht, Luis Serrano, Martha L. Bulyk, and Albertha J. M. Walhout
Endoplasmic reticulum stress and pancreatic beta-cell death, Sonya G. Fonseca, Jesper Gromada, and Fumihiko Urano
Zinc finger protein-dependent and -independent contributions to the in vivo off-target activity of zinc finger nucleases, Ankit Gupta, Xiangdong Meng, Lihua Julie Zhu, Nathan D. Lawson, and Scot A. Wolfe
The COPI vesicle complex binds and moves with survival motor neuron within axons, Cyril P. Jayakumar, Matthew C. Evans, Venugopal Thayanithy, Naoko Taniguchi-Ishigaki, Ingolf Bach, Adrianne L. Kolpak, Gary J. Bassell, Rossoll Wilfried, Christian L. Lorson, Zheng-Zheng Bao, and Elliot J. Androphy
New partners for HP1 in transcriptional gene silencing, Paul D. Kaufman
Genome surveyor 2.0: cis-regulatory analysis in Drosophila, Majid Kazemian, Michael H. Brodsky, and Saurabh Sinha
The transcription factor PlagL2 activates Mpl transcription and signaling in hematopoietic progenitor and leukemia cells, Sean F. Landrette, Dmitri Madera, Feng He, and Lucio H. Castilla
Forward and reverse genetic approaches for the analysis of vertebrate development in the zebrafish, Nathan D. Lawson and Scot A. Wolfe
Overlapping regulation of CenH3 localization and histone H3 turnover by CAF-1 and HIR proteins in Saccharomyces cerevisiae, Jessica Lopes da Rosa Spiegler, John Holik, Erin M. Green, Oliver J. Rando, and Paul D. Kaufman
Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression, Lesley T. MacNeil and Albertha J. M. Walhout
Translocation mapping exposes the risky lifestyle of B cells, Rachel Patton McCord and Job Dekker
A User's Guide to the Encyclopedia of DNA Elements (ENCODE), Richard M. Meyers, ENCODE Project Consortium, Job Dekker, Bryan R. Lajoie, Amartya Sanyal, Zhiping Weng, Troy W. Whitfield, and Jie Wang
PDP-1 Links the TGF-β and IIS Pathways to Regulate Longevity, Development, and Metabolism, Sri Devi Narasimhan, Kelvin Yen, Ankita Bansal, Eun-Soo Kwon, Srivatsan Padmanabhan, and Heidi A. Tissenbaum
Measuring ER stress and the unfolded protein response using mammalian tissue culture system, Christine M. Oslowski and Fumihiko Urano
Yeast one-hybrid assays for gene-centered human gene regulatory network mapping, John S. Reece-Hoyes, A. Rasim Barutcu, Rachel Patton McCord, Jun Seop Jeong, Lizhi Jiang, Andrew Macwilliams, Xinping Yang, Kourosh Salehi-Ashtiani, David E. Hill, Seth Blackshaw, Heng Zhu, Job Dekker, and Albertha J. M. Walhout
Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping, John S. Reece-Hoyes, Alos Diallo, Bryan R. Lajoie, Amanda Kent, Shaleen Shrestha, Sreenath Kadreppa, Colin Pesyna, Job Dekker, Chad L. Myers, and Albertha J. M. Walhout
Chromatin globules: a common motif of higher order chromosome structure, Amartya Sanyal, Davide Bau, Marc A. Marti-Renom, and Job Dekker
BCR-ABL suppresses autophagy through ATF5-mediated regulation of mTOR transcription, Zhi Sheng, Leyuan Ma, Jiaoyuan Sun, Lihua Julie Zhu, and Michael R. Green
Transcription factor Lhx2 is necessary and sufficient to suppress astrogliogenesis and promote neurogenesis in the developing hippocampus, Lakshmi Subramanian, Anindita Sarkar, Ashwin S. Shetty, Bhavana Muralidharan, Hari Padmanabhan, Michael Piper, Edwin S. Monuki, Ingolf Bach, Richard M. Gronostajski, Linda J. Richards, and Shubha Tole
Chromosome-Biased Binding and Gene Regulation by the Caenorhabditis elegans DRM Complex, Tomoko M. Tabuchi, Bart Deplancke, Naoki Osato, Lihua Julie Zhu, Inmaculada M. Barrasa, Melissa M. Harrison, Robert H. Horvitz, Albertha J. M. Walhout, and Kirsten A. Hagstrom
The IRE1alpha-XBP1 pathway is essential for osteoblast differentiation through promoting transcription of Osterix, Takahide Tohmonda, Yoshiteru Miyauchi, Rajarshi Ghosh, Masaki Yoda, Shinichi Uchikawa, Jiro Takito, Hideo Morioka, Masaya Nakamura, Takao Iwawaki, Kazuhiro Chiba, Yoshiaki Toyama, Fumihiko Urano, and Keisuke Horiuchi
The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation, Mark A. Umbarger, Esteban Toro, Matthew A. Wright, Gregory J. Porreca, Davide Bau, Sun-Hae Hong, Michael J. Fero, Lihua Julie Zhu, Marc A. Marti-Renom, Harley H. McAdams, Lucy Shapiro, Job Dekker, and George M. Church
Gene-centered regulatory network mapping, Albertha J. M. Walhout
What does biologically meaningful mean? A perspective on gene regulatory network validation, Albertha J. M. Walhout
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression, Kevin C. Wang, Yul W. Yang, Bo Liu, Amartya Sanyal, Ryan Corces-Zimmerman, Yong Chen, Bryan R. Lajoie, Angeline Protacio, Ryan A. Flynn, Rajnish A. Gupta, Joanna Wysocka, Ming Lei, Job Dekker, Jill A. Helms, and Howard Y. Chang
RNF34 is a cold-regulated E3 ubiquitin ligase for PGC-1alpha and modulates brown fat cell metabolism, Ping Wei, Dongning Pan, Chunxiao Mao, and Yong-Xu Wang
The role of cellular factors in promoting HIV budding, Eric R. Weiss and Heinrich G. Gottlinger
DAF-16/Forkhead box O transcription factor: many paths to a single Fork(head) in the road, Kelvin Yen, Sri Devi Narasimhan, and Heidi A. Tissenbaum
Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells, Ozlem Yildirim, Ruowang Li, Jui-Hung Hung, Poshen B. Chen, Xianjun Dong, Ly-Sha Ee, Zhiping Weng, Oliver J. Rando, and Thomas G. Fazzio
Sphingosine kinases and their metabolites modulate endolysosomal trafficking in photoreceptors, Ikuko Yonamine, Takeshi Bamba, Niraj K. Nirala, Nahid Jesmin, Teresa Kosakowska-Cholody, Kunio Nagashima, Eiichiro Fukasaki, Jairaj K. Acharya, and Usha Acharya
CDase is a pan-ceramidase in Drosophila, Changqing Yuan, Raghavendra Pralhada Rao, Nahid Jesmin, Takeshi Bamba, Kunio Nagashima, Alberto Pascual, Thomas Preat, Eiichiro Fukusaki, Usha Acharya, and Jairaj K. Acharya
SSDP cofactors regulate neural patterning and differentiation of specific axonal projections, Zhen Zhong, Hong Ma, Naoko Taniguchi-Ishigaki, Lalitha Nagarajan, Catherina G. Becker, Ingolf Bach, and Thomas Becker
Evaluation and application of modularly assembled zinc-finger nucleases in zebrafish, Cong Zhu, Tom Smith, Joseph C. McNulty, Amy L. Rayla, Abirami Lakshmanan, Arndt F. Siekmann, Matthew Buffardi, Xiangdong Meng, Jimann Shin, Arun Padmanabhan, Daniel Cifuentes, Antonio J. Giraldez, A. Thomas Look, Jonathan A. Epstein, Nathan D. Lawson, and Scot A. Wolfe
FlyFactorSurvey: a database of Drosophila transcription factor binding specificities determined using the bacterial one-hybrid system, Lihua Julie Zhu, Ryan G. Christensen, Majid Kazemian, Christopher J. Hull, Metewo Selase Enuameh, Matthew D. Basciotta, Jessie A. Brasefield, Cong Zhu, Yuna Asriyan, David S. Lapointe, Saurabh Sinha, Scot A. Wolfe, and Michael H. Brodsky
Listeria monocytogenes infection induces prosurvival metabolic signaling in macrophages, Tie Zou, Oleg Garifulin, Robert Berland, and Victor L. Boyartchuk
Publications from 2010
Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network., H. Efsun Arda, Stefan Taubert, Lesley T. MacNeil, Colin C. Conine, Ben Tsuda, Marc Van Gilst, Reynaldo Sequerra, Lynn Doucette-Stamm, Keith R. Yamamoto, and Albertha J. M. Walhout
Gene-centered regulatory networks, H. Efsun Arda and Albertha J. M. Walhout
Chemical genetic strategy identifies histone deacetylase 1 (HDAC1) and HDAC2 as therapeutic targets in sickle cell disease, James E. Bradner, Raymond Mak, Shyam K. Tanguturi, Ralph Mazitschek, Stephen J. Haggarty, Kenneth Ross, Cindy Y. Chang, Jocelyn Bosco, Nathan West, Elizabeth Morse, Katherine Lin, John Paul Shen, Nicholas P. Kwiatkowski, Nele Gheldof, Job Dekker, Daniel J. DeAngelo, Steven A. Carr, Stuart L. Schreiber, Todd R. Golub, and Benjamin L. Ebert
Visual presentation as a welcome alternative to textual presentation of gene annotation information, Jairav Desai, Jared M. Flatow, Jie Song, Lihua Julie Zhu, Pan Du, Chiang-Ching Huang, Hui Lu, Simon M. Lin, and Warren A. Kibbe
A mammalian siderophore synthesized by an enzyme with a bacterial homolog involved in enterobactin production, Laxminarayana R. Devireddy, Daniel O. Hart, David H. Goetz, and Michael R. Green
Wolfram syndrome 1 gene negatively regulates ER stress signaling in rodent and human cells, Sonya G. Fonseca, Shinsuke Ishigaki, Christine M. Oslowski, Simin Lu, Kathryn L. Lipson, Rajarshi Ghosh, Emiko Hayashi, Hisamitsu Ishihara, Yoshitomo Oka, M. Alan Permutt, and Fumihiko Urano
Stress hypERactivation in the beta-cell, Sonya G. Fonseca, Fumihiko Urano, Mark Burcin, and Jesper Gromada
Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene, Nele Gheldof, Emily M. Smith, Tomoko M. Tabuchi, Christoph M. Koch, Ian Dunham, John A. Stamatoyannopoulos, and Job Dekker
Transcriptional regulation of VEGF-A by the unfolded protein response pathway, Rajarshi Ghosh, Kathryn L. Lipson, Karen E. Sargent, Arthur M. Mercurio, Joan S. Hunt, David Ron, and Fumihiko Urano
AATF mediates an antiapoptotic effect of the unfolded protein response through transcriptional regulation of AKT1, Shinsuke Ishigaki, Sonya G. Fonseca, Christine M. Oslowski, Agata Jurczyk, Jeffrey R. Shearstone, Lihua Julie Zhu, M. A. Permutt, Dale L. Greiner, Fumihiko Urano, and Rita Bortell
A novel role for the centrosomal protein, pericentrin, in regulation of insulin secretory vesicle docking in mouse pancreatic beta-cells, Agata Jurczyk, Steven C. Pino, Bryan O'Sullivan-Murphy, Martha Addorio, Erich A. Lidstone, Philip diLorio, Kathryn L. Lipson, Clive Standley, Kevin E. Fogarty, Lawrence M. Lifshitz, Fumihiko Urano, John P. Mordes, Dale L. Greiner, Aldo A. Rossini, and Rita Bortell
Mediator and cohesin connect gene expression and chromatin architecture, Michael H. Kagey, Jamie J. Newman, Steve Bilodeau, Ye Zhan, David A. Orlando, Nynke L. van Berkum, Christopher C. Ebmeier, Jesse Goossens, Peter B. Rahl, Stuart S. Levine, Dylan J. Taatjes, Job Dekker, and Richard A. Young
Chromatin as a potential carrier of heritable information, Paul D. Kaufman and Oliver J. Rando
Sister cohesion and structural axis components mediate homolog bias of meiotic recombination, Keun P. Kim, Beth M. Weiner, Liangran Zhang, Amy Jordan, Job Dekker, and Nancy Kleckner
Catalytic activation of histone acetyltransferase Rtt109 by a histone chaperone, Erin M. Kolonko, Brittany N. Albaugh, Scott E. Lindner, Yuanyuan Chen, Kenneth A. Satyshur, Kevin M. Arnold, Paul D. Kaufman, James G. Keck, and John M. Denu
A new DAF-16 isoform regulates longevity, Eun-Soo Kwon, Sri Devi Narasimhan, Kelvin Yen, and Heidi A. Tissenbaum
Histone acetyltransferase Rtt109 is required for Candida albicans pathogenesis., Jessica Lopes da Rosa Spiegler, Victor L. Boyartchuk, Lihua Julie Zhu, and Paul D. Kaufman
Proliferating cell nuclear antigen (PCNA) is required for cell cycle-regulated silent chromatin on replicated and nonreplicated genes, Andrew Miller, Jiji Chen, Taichi E. Takasuka, Jennifer L. Jacobi, Paul D. Kaufman, Joseph M.K. Irudayaraj, and Ann L. Kirchmaier
Integrating one-dimensional and three-dimensional maps of genomes, Natalia Naumova and Job Dekker
MicroRNA-mediated integration of haemodynamics and Vegf signalling during angiogenesis, Stefania Nicoli, Clive Standley, Paul Walker, Adam Hurlstone, Kevin E. Fogarty, and Nathan D. Lawson
A switch from life to death in endoplasmic reticulum stressed beta-cells, Christine M. Oslowski and Fumihiko Urano
The binary switch between life and death of endoplasmic reticulum-stressed beta cells, Christine M. Oslowski and Fumihiko Urano
The binary switch that controls the life and death decisions of ER stressed beta cells, Christine M. Oslowski and Fumihiko Urano
A genome-wide RNA interference screen reveals an essential CREB3L2-ATF5-MCL1 survival pathway in malignant glioma with therapeutic implications, Zhi Sheng, Li Li, Lihua Julie Zhu, Thomas W. Smith, Andrea Demers, Alonzo H. Ross, Richard P. Moser, and Michael R. Green
The U2AF35-related protein Urp contacts the 3' splice site to promote U12-type intron splicing and the second step of U2-type intron splicing, Haihong Shen, Xuexiu Zheng, Stephan Luecke, and Michael R. Green
Maternal Rnf12/RLIM is required for imprinted X-chromosome inactivation in mice, JongDae Shin, Michael Bossenz, Young Chung, Hong Ma, Meg Byron, Naoko Taniguchi-Ishigaki, Xiaochun Zhu, Jiao Baowei, Lisa L. Hall, Michael R. Green, Stephen N. Jones, Irm Hermans-Borgmeyer, Jeanne B. Lawrence, and Ingolf Bach
Hi-C: a method to study the three-dimensional architecture of genomes, Nynke L. van Berkum, Erez Lieberman-Aiden, Louise Williams, Maxim Imakaev, Andreas Gnirke, Leonid A. Mirny, Job Dekker, and Eric S. Lander
Genomics tools for unraveling chromosome architecture, Bas van Steensel and Job Dekker
Role for IGFBP7 in senescence induction by BRAF, Narendra Wajapeyee, Ryan W. Serra, Xiaochun Zhu, Meera Mahalingam, and Michael R. Green
Role for IGFBP7 in senescence induction by BRAF., Narendra Wajapeyee, Ryan W. Serra, Xiaochun Zhu, Meera Mahalingam, and Michael R. Green
Senescence induction in human fibroblasts and hematopoietic progenitors by leukemogenic fusion proteins., Narendra Wajapeyee, Shu-Zong Wang, Ryan W. Serra, Peter D. Solomon, Arvindhan Nagarajan, Xiaochun Zhu, and Michael R. Green
PPARs: diverse regulators in energy metabolism and metabolic diseases, Yong-Xu Wang
Rescue of HIV-1 Release by Targeting Widely Divergent NEDD4-Type Ubiquitin Ligases and Isolated Catalytic HECT Domains to Gag, Eric R. Weiss, Elena Popova, Hikaru Yamanaka, Hyung Cheol Kim, Jon M. Huibregtse, and Heinrich G. Göttlinger
A comparative study of fat storage quantitation in nematode Caenorhabditis elegans using label and label-free methods, Kelvin Yen, Thuc T. Le, Ankita Bansal, Sri Devi Narasimhan, Ji-Xin Cheng, and Heidi A. Tissenbaum
ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data, Lihua Julie Zhu, Claude Gazin, Nathan D. Lawson, Herve Pages, Simon M. Lin, David S. Lapointe, and Michael R. Green
Publications from 2009
A Versatile Viral System for Expression and Depletion of Proteins in Mammalian Cells, Eric Campeau, Victoria E. Ruhl, Francis Rodier, Corey Lewis Smith, Brittany L. Rahmberg, Jill O. Fuss, Judith Campisi, Paul Yaswen, Priscilla K. Cooper, and Paul D. Kaufman
Gene dates, parties and galas. Symposium on Chromatin Dynamics and Higher Order Organization, Howard Y. Chang, Olivier Cuvier, and Job Dekker
Differential roles of insulin-like growth factor receptor- and insulin receptor-mediated signaling in the phenotypes of hepatocellular carcinoma cells, Ya-Wen Chen, Victor L. Boyartchuk, and Brian C. Lewis
A genetic screen for vascular mutants in zebrafish reveals dynamic roles for Vegf/Plcg1 signaling during artery development, Laurence D. Covassin, Arndt F. Siekmann, Michael C. Kacergis, Elizabeth Laver, John C. Moore, Jacques A. Villefranc, Brant M. Weinstein, and Nathan D. Lawson
Ceramide kinase regulates phospholipase C and phosphatidylinositol 4, 5, bisphosphate in phototransduction, Ujjaini Dasgupta, Takeshi Bamba, Salvatore Chiantia, Pusha Karim, Ahmad N. Abou Tayoun, Ikuko Yonamine, Satinder S. Rawat, Raghavendra Pralhada Rao, Kunio Nagashima, Eiichiro Fukusaki, Vishwajeet Puri, Patrick J. Dolph, Petra Schwille, Jairaj K. Acharya, and Usha Acharya
Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening, Barbara D'haene, Catia Attanasio, Diane Beysen, Josee Dostie, Edmond Lemire, Philippe Bouchard, Michael Field, Kristie Jones, Birgit Lorenz, Bjorn Menten, Karen Buysse, Filip Pattyn, Marc Friedli, Catherine Ucla, Colette Rossier, Carine Wyss, Frank Speleman, Anne De Paepe, Job Dekker, Stylianos E. Antonarakis, and Elfride De Baere
A negatively charged residue in place of histone H3K56 supports chromatin assembly factor association but not genotoxic stress resistance, Judith A. Erkmann and Paul D. Kaufman
Endoplasmic reticulum stress in beta-cells and development of diabetes, Sonya G. Fonseca, Mark Burcin, Jesper Gromada, and Fumihiko Urano
A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors, Christian A. Grove, Federico De Masi, M. Inmaculada Barrasa, Daniel E. Newburger, Mark J. Alkema, Martha L. Bulyk, and Albertha J. M. Walhout
Selective interaction between Trf3 and Taf3 required for early development and hematopoiesis, Daniel O. Hart, Manas K. Santra, Tamal Raha, and Michael R. Green
Regulation of estrogen-dependent transcription by the LIM cofactors CLIM and RLIM in breast cancer, Steven A. Johnsen, Cenap Gungor, Tanja Prenzel, Sabine Riethdorf, Lutz Riethdorf, Naoko Taniguchi-Ishigaki, Thomas Rau, Baris Tursun, J. David Furlow, Guido Sauter, Martin Scheffner, Klaus Pantel, Frank Gannon, and Ingolf Bach
Valproate, a mood stabilizer, induces WFS1 expression and modulates its interaction with ER stress protein GRP94, Chihiro Kakiuchi, Shinsuke Ishigaki, Christine M. Oslowski, Sonya G. Fonseca, Tadafumi Kato, and Fumihiko Urano
Runx2 induces acute myeloid leukemia in cooperation with Cbfbeta-SMMHC in mice, Ya-Huei Kuo, Sayyed K. Zaidi, Svetlana Gornostaeva, Toshihisa Komori, Gary S. Stein, and Lucio H. Castilla
My5C: web tools for chromosome conformation capture studies, Bryan R. Lajoie, Nynke L. van Berkum, Amartya Sanyal, and Job Dekker
Comprehensive mapping of long-range interactions reveals folding principles of the human genome, Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Berstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John A. Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, and Job Dekker
The interplay between transcription factors and microRNAs in genome-scale regulatory networks, Natalia Julia Martinez and Albertha J. M. Walhout
Yeast silent mating type loci form heterochromatic clusters through silencer protein-dependent long-range interactions, Adriana Miele, Kerstin Bystricky, and Job Dekker
Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C), Adriana Miele and Job Dekker
InAKTivation of insulin/IGF-1 signaling by dephosphorylation., Sri Devi Narasimhan, Arnab Mukhopadhyay, and Heidi A. Tissenbaum