Publications from 2013
Anatomical basis of sun compass navigation II: The neuronal composition of the central complex of the monarch butterfly, Stanley Heinze, Jeremy Florman, Surainder Asokaraj, Basil el Jundi, and Steven M. Reppert
Efficient targeted mutagenesis in the monarch butterfly using zinc finger nucleases, Christine Merlin, Lauren E. Beaver, Orley R. Taylor, Scot A. Wolfe, and Steven M. Reppert
MonarchBase: the monarch butterfly genome database, Shuai Zhan and Steven M. Reppert
Publications from 2012
Wld(S) Prevents Axon Degeneration through Increased Mitochondrial Flux and Enhanced Mitochondrial Ca(2+) Buffering., Michelle A. Avery, Timothy M. Rooney, Jignesh D. Pandya, Thomas M. Wishart, Thomas H. Gillingwater, James W. Geddes, Patrick G. Sullivan, and Marc R. Freeman
The Secreted Immunoglobulin Domain Proteins ZIG-5 and ZIG-8 Cooperate with L1CAM/SAX-7 to Maintain Nervous System Integrity, Claire Y. Benard, Cassandra Blanchette, Janine Recio, and Oliver Hobert
Use of a Drosophila genome-wide conserved sequence database to identify functionally related cis-regulatory enhancers, Thomas Brody, Amarendra S. Yavatkar, Alexander Kuzin, Mukta Kundu, Leonard J. Tyson, Jermaine Ross, Tzu-Yang Lin, Chi-Hon Lee, Takeshi Awasaki, Tzumin Lee, and Ward F. Odenwald
Circadian rhythms: An electric jolt to the clock, Patrick Emery
Integration of a retrograde signal during synapse formation by glia-secreted TGF-beta ligand, Yuly F. Fuentes-Medel, James A. Ashley, Romina Barria, Rachel Maloney, Marc R. Freeman, and Vivian Budnik
Discordant timing between antennae disrupts sun compass orientation in migratory monarch butterflies, Patrick A. Guerra, Christine Merlin, Robert J. Gegear, and Steven M. Reppert
Anatomical basis of sun compass navigation I: the general layout of the monarch butterfly brain, Stanley Heinze and Steven M. Reppert
Protein Gq modulates termination of phototransduction and prevents retinal degeneration, Wen Hu, Didi Wan, Xiaoming Yu, Jinguo Cao, Peiyi Guo, Hong-Sheng Li, and Junhai Han
Wnt signaling regulates acetylcholine receptor translocation and synaptic plasticity in the adult nervous system, Michael Jensen, Frederic J. Hoerndli, Penelope J. Brockie, Rui Wang, Erica Johnson, Dane Maxfield, Michael M. Francis, David M. Madsen, and Andres V. Maricq
Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation, Hina Kalra, Vivian Budnik, and Suresh Mathivanan
Circadian rhythm of temperature preference and its neural control in Drosophila, Haruna Kaneko, Lauren M. Head, Jinli Ling, Xin Tang, Yilin Liu, Paul E. Hardin, Patrick Emery, and Fumika N. Hamada
Hierarchical deployment of factors regulating temporal fate in a diverse neuronal lineage of the Drosophila central brain, Chih-Fei Kao, Hung-Hsiang Yu, Yisheng He, Jui-Chun Kao, and Tzumin Lee
Increasing heterogeneity in the organization of synaptic inputs of mature olfactory bulb neurons generated in newborn rats, Wolfgang Kelsch, Shuyin Sim, and Carlos Lois
Genetic labeling of neuronal subsets through enhancer trapping in mice, Wolfgang Kelsch, Alberto Stolfi, and Carlos Lois
Wnt Signaling in Neuromuscular Junction Development, Kate Koles and Vivian Budnik
Mechanism of evenness interrupted (evi)-exosome release at synaptic boutons, Kate Koles, John J. Nunnari, Ceren Korkut, Romina Barria, Cassandra Brewer, Yihang Li, John D. Leszyk, Bing Zhang, and Vivian Budnik
Inhibitory control of synaptic and behavioral plasticity by octopaminergic signaling, Alex C. Koon and Vivian Budnik
Antibodies for assessing circadian clock proteins in the rodent suprachiasmatic nucleus, Joseph Lesauter, Christopher M. Lambert, Margaret R. Robotham, Zina Model, Rae Silver, and David R. Weaver
KAYAK-alpha modulates circadian transcriptional feedback loops in Drosophila pacemaker neurons, Jinli Ling, Raphaelle Dubruille, and Patrick Emery
Lineage analysis of Drosophila lateral antennal lobe neurons reveals notch-dependent binary temporal fate decisions, Suewei Lin, Chih-Fei Kao, Hung-Hsiang Yu, Ya-ling Huang, and Tzumin Lee
Generating neuronal diversity in the Drosophila central nervous system, Suewei Lin and Tzumin Lee
Negative regulation of glial engulfment activity by Draper terminates glial responses to axon injury, Mary A. Logan, Rachel Hackett, Johnna E. Doherty, Amy E. Sheehan, Sean D. Speese, and Marc R. Freeman
Genetics in non-genetic model systems, Carlos Lois and James O. Groves
Inwardly rectifying potassium channels in Drosophila, Zhuo Luan and Hong-Sheng Li
Coincident generation of pyramidal neurons and protoplasmic astrocytes in neocortical columns, Sanjay Magavi, Drew Friedmann, Garrett Banks, Alberto Stolfi, and Carlos Lois
Unraveling navigational strategies in migratory insects, Christine Merlin, Stanley Heinze, and Steven M. Reppert
Similarity of Visual Selectivity among Clonally Related Neurons in Visual Cortex, Gen Ohtsuki, Megumi Nishiyama, Takashi Yoshida, Tomonari Murakami, Mark Histed, Carlos Lois, and Kenichi Ohki
dSarm/Sarm1 is required for activation of an injury-induced axon death pathway, Jeannette M. Osterloh, Jing Yang, Timothy M. Rooney, A. Nicole Fox, Robert Adalbert, Eric H. Powell, Amy E. Sheehan, Michelle A. Avery, Rachel Hackett, Mary A. Logan, Jennifer M. MacDonald, Jennifer S. Ziegenfuss, Stefan Milde, Ying-Ju Hou, Carl Nathan, Aihao Ding, Robert H. Brown Jr., Laura Comforti, Michael Coleman, Marc Tessier-Lavigne, Stephan Zuchner, and Marc R. Freeman
The neuroethology of C. elegans escape, Jennifer K. Pirri and Mark J. Alkema
Disruption of gene expression rhythms in mice lacking secretory vesicle proteins IA-2 and IA-2β, Sohan Punia, Kyle K. Rumery, Elizabeth A. Yu, Christopher M. Lambert, Abner L. Notkins, and David R. Weaver
Intercellular calcium signaling in a gap junction-coupled cell network establishes asymmetric neuronal fates in C. elegans, Jennifer A. Schumacher, Yi-Wen Hsieh, Shiuhwei Chen, Jennifer K. Pirri, Mark J. Alkema, Wen-hong Li, Chieh Chang, and Chiou-Fen Chuang
Wandering neuronal migration in the postnatal vertebrate forebrain, Benjamin B. Scott, Timothy Gardner, Ni Ji, Michale S. Fee, and Carlos Lois
Molecular diversity of Dscam and self-recognition, Lei Shi and Tzumin Lee
Nuclear envelope budding enables large ribonucleoprotein particle export during synaptic Wnt signaling, Sean D. Speese, James A. Ashley, Vahbiz Jokhi, John J. Nunnari, Romina Barria, Yihang Li, Bulent Ataman, Alex C. Koon, Young-Tae Chang, Qian Li, Melissa J. Moore, and Vivian Budnik
Analysis of glial cell development and function in Drosophila, Tobias Stork, Rebecca Bernardos, and Marc R. Freeman
Combining comparative proteomics and molecular genetics uncovers regulators of synaptic and axonal stability and degeneration in vivo, Thomas M. Wishart, Timothy M. Rooney, Douglas J. Lamont, Ann K. Wright, A. Jennifer Morgon, Mandy Jackson, Marc R. Freeman, and Thomas H. Gillingwater
Acute genetic manipulation of neuronal activity for the functional dissection of neural circuits-a dream come true for the pioneers of behavioral genetics, Moto Yoshihara and Kei Ito
Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus, Haisun Zhu, Rajanikanth Vadigepalli, Rachel Rafferty, Gregory E. Gonye, David R. Weaver, and James S. Schwaber
Distinct molecular pathways mediate glial activation and engulfment of axonal debris after axotomy, Jennifer S. Ziegenfuss, Johnna E. Doherty, and Marc R. Freeman
Publications from 2011
Glia instruct developmental neuronal remodeling through TGF-beta signaling, Takeshi Awasaki, Ya-ling Huang, Michael B. O'Connor, and Tzumin Lee
New tools for the analysis of glial cell biology in Drosophila, Takeshi Awasaki and Tzumin Lee
Orphan nuclear receptors control neuronal remodeling during fly metamorphosis, Takeshi Awasaki and Tzumin Lee
Wnt signaling during synaptic development and plasticity, Vivian Budnik and Patricia C. Salinas
Remembering nutrient quality of sugar in Drosophila, Christopher J. Burke and Scott Waddell
Photic resetting and entrainment in CLOCK-deficient mice, Robert Dallmann, Jason P. DeBruyne, and David R. Weaver
From synapse to nucleus and back again--communication over distance within neurons, Mike Fainzilber, Vivian Budnik, Rosalind A. Segal, and Michael R. Kreutz
Invertebrate glia. Introduction, David Featherstone and Marc R. Freeman
Human cryptochrome exhibits light-dependent magnetosensitivity, Lauren E. Foley, Robert J. Gegear, and Steven M. Reppert
Sun compass integration of skylight cues in migratory monarch butterflies, Stanley Heinze and Steven M. Reppert
Bringing fly brains in line, Wolf Huetteroth and Scott Waddell
Hungry flies tune to vinegar, Wolf Huetteroth and Scott Waddell
Autoregulatory and paracrine control of synaptic and behavioral plasticity by octopaminergic signaling, Alex C. Koon, James A. Ashley, Romina Barria, Shamik DasGupta, Ruth Brain, Scott Waddell, Mark J. Alkema, and Vivian Budnik
Drosophila appetitive olfactory conditioning, Michael Jonathan Krashes and Scott Waddell
Drosophila aversive olfactory conditioning, Michael Jonathan Krashes and Scott Waddell
The period of the circadian oscillator is primarily determined by the balance between casein kinase 1 and protein phosphatase 1, Hyeong-min Lee, Rongmin Chen, Hyukmin Kim, Jean-Pierre Etchegaray, David R. Weaver, and Choogon Lee
Serotonin-mushroom body circuit modulating the formation of anesthesia-resistant memory in Drosophila, Pei-Tseng Lee, Hsuan-Wen Lin, Yu-Hsuan Chang, Tsai-Feng Fu, Josh Dubnau, Jay Hirsh, Tzumin Lee, and Ann-Shyn Chiang
Optogenetic manipulation of neural activity in freely moving Caenorhabditis elegans, Andrew M. Leifer, Christopher Fang-Yen, Marc Gershow, Mark J. Alkema, and Aravinthan D. T. Samuel
The C. elegans Touch Response Facilitates Escape From Predacious Fungi, Sean M. Maguire, Christopher M. Clark, Jennifer K. Pirri, John J. Nunnari, and Mark J. Alkema
Associative memory: without a trace, Emmanuel Perisse and Scott Waddell
A Pair of Inhibitory Neurons Are Required to Sustain Labile Memory in the Drosophila Mushroom Body, Jena L. Pitman, Wolf Huetteroth, Christopher J. Burke, Michael Jonathan Krashes, Sen-Lin Lai, Tzumin Lee, and Scott Waddell
Distinct patterns of Period gene expression in the suprachiasmatic nucleus underlie circadian clock photoentrainment by advances or delays, William J. Schwartz, Mahboubeh Tavakoli-Nezhad, Christopher M. Lambert, David R. Weaver, and Horacio O. de la Iglesia
Anisotropic path searching for automatic neuron reconstruction, Jun Xie, Ting Zhao, Tzumin Lee, Eugene Myers, and Hanchuan Peng
Disrupting the circadian clock: Gene-specific effects on aging, cancer, and other phenotypes, Elizabeth A. Yu and David R. Weaver
The monarch butterfly genome yields insights into long-distance migration, Shuai Zhan, Christine Merlin, Jeffrey L. Boore, and Steven M. Reppert
Publications from 2010
A dominant mutation in a neuronal acetylcholine receptor subunit leads to motor neuron degeneration in Caenorhabditis elegans, Belinda Barbagallo, Hilary A. Prescott, Patrick Boyle, Jason Climer, and Michael M. Francis
Wallerian degeneration, wld(s), and nmnat, Michael P. Coleman and Marc R. Freeman
Altered body mass regulation in male mPeriod mutant mice on high-fat diet, Robert Dallmann and David R. Weaver
A new role for microRNA-9 in human neural progenitor cells, Celine Delaloy and Fen-Biao Gao
The role of Drosophila Lamin C in muscle function and gene expression, George Dialynas, Sean D. Speese, Vivian Budnik, Pamela K. Geyer, and Lori L. Wallrath
Casein kinase 1 delta (CK1delta) regulates period length of the mouse suprachiasmatic circadian clock in vitro, Jean-Pierre Etchegaray, Elizabeth A. Yu, Premananda Indic, Robert Dallmann, and David R. Weaver
Specification and morphogenesis of astrocytes, Marc R. Freeman
Menage a Trio during BMP-Mediated Retrograde Signaling at the NMJ, Yuly F. Fuentes Medel and Vivian Budnik
Context-dependent functions of specific microRNAs in neuronal development, Fen-Biao Gao
Animal cryptochromes mediate magnetoreception by an unconventional photochemical mechanism, Robert J. Gegear, Lauren E. Foley, Amy L. Casselman, and Steven M. Reppert
MicroRNA-29b regulates the expression level of human progranulin, a secreted glycoprotein implicated in frontotemporal dementia, Jian Jiao, Lauren D. Herl, Robert V. Farese, and Fen-Biao Gao
Birth time/order-dependent neuron type specification, Chih-Fei Kao and Tzumin Lee
Clock and cycle limit starvation-induced sleep loss in Drosophila, Alex Carl Keene, Erik R. Duboue, Daniel M. McDonald, Monica Dus, Greg S.B. Suh, Scott Waddell, and Justin Blau
Lineage-specific effects of Notch/Numb signaling in post-embryonic development of the Drosophila brain, Suewei Lin, Sen-Lin Lai, Hung-Hsiang Yu, Takahiro Chihara, Liqun Luo, and Tzumin Lee
Activation of autophagy during cell death requires the engulfment receptor Draper, Christina K. McPhee, Mary A. Logan, Marc R. Freeman, and Eric H. Baehrecke
Activity paradigm to induce Drosophila larval neuromuscular junction growth, Preethi Ramachandran and Vivian Budnik
Dissection of Drosophila larval body-wall muscles, Preethi Ramachandran and Vivian Budnik
Electron microscopy of Drosophila larval neuromuscular junctions, Preethi Ramachandran and Vivian Budnik
Fm1-43 labeling of Drosophila larval neuromuscular junctions, Preethi Ramachandran and Vivian Budnik
Immunocytochemical staining of Drosophila larval body-wall muscles, Preethi Ramachandran and Vivian Budnik
Internalization and trafficking assay for Drosophila larvae, Preethi Ramachandran and Vivian Budnik
Preparation of early Drosophila embryonic fillets (before cuticle deposition), Preethi Ramachandran and Vivian Budnik
Preparation of late Drosophila embryonic fillets, Preethi Ramachandran and Vivian Budnik
Navigational mechanisms of migrating monarch butterflies, Steven M. Reppert, Robert J. Gegear, and Christine Merlin
Dependence on a retinophilin/myosin complex for stability of PKC and INAD and termination of phototransduction, Kartik Venkatachalam, David Wasserman, Xiaoyue Wang, Ruoxia Li, Eric Mills, Rebecca Elsaesser, Hong-Sheng Li, and Craig Montell
Dopamine reveals neural circuit mechanisms of fly memory, Scott Waddell
A complete developmental sequence of a Drosophila neuronal lineage as revealed by twin-spot MARCM, Hung-Hsiang Yu, Chih-Fei Kao, Yisheng He, Peng Ding, Jui-Chun Kao, and Tzumin Lee
Light and temperature control the contribution of specific DN1 neurons to Drosophila circadian behavior, Yong Zhang, Yixiao Liu, Diana Wentworth, Paul E. Hardin, and Patrick Emery
Publications from 2009
Oxygen sensation: into thick air, Mark J. Alkema
Wld S requires Nmnat1 enzymatic activity and N16-VCP interactions to suppress Wallerian degeneration, Michelle A. Avery, Amy E. Sheehan, Kimberly S. Kerr, Jing Wang, and Marc R. Freeman
The small, secreted immunoglobulin protein ZIG-3 maintains axon position in Caenorhabditis elegans, Claire Y. Benard, Nartono Tjoe, Thomas Boulin, Janine Recio, and Oliver Hobert
Ensheathing glia function as phagocytes in the adult Drosophila brain, Johnna E. Doherty, Mary A. Logan, Ozge E. Tasdemir, and Marc R. Freeman
A constant light-genetic screen identifies KISMET as a regulator of circadian photoresponses, Raphaëlle Dubruille, Alejandro D. Murad, Michael Rosbash, and Patrick Emery