This collection showcases journal articles and other publications and presentations authored by researchers in the UMass Metabolic Network, a consortium of UMass faculty members who share a common interest in metabolism research.

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Publications from 2017

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Cleaning House: Selective Autophagy of Organelles, Allyson L. Anding and Eric H. Baehrecke

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Alcohol-induced miR-155 and HDAC11 inhibit negative regulators of the TLR4 pathway and lead to increased LPS responsiveness of Kupffer cells in alcoholic liver disease, Shashi Bala, Timea Csak, Karen Kodys, Donna Catalano, Aditya Ambade, Istvan Furi, Patrick Lowe, Yeonhee Cho, Arvin Iracheta-Vellve, and Gyongyi Szabo

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The connection between BRG1, CTCF and topoisomerases at TAD boundaries, Ahmet Rasim Barutcu, Jane B. Lian, Janet L. Stein, Gary S. Stein, and Anthony N. Imbalzano

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Molecular Basis and Targeted Inhibition of CBFbeta-SMMHC Acute Myeloid Leukemia, Lucio H. Castilla and John H. Bushweller

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Systemic insulin sensitivity is regulated by GPS2 inhibition of AKT ubiquitination and activation in adipose tissue, Carly T. Cederquist, Claudia Lentucci, Camila Martinez Calejman, Vanessa Hayashi, Joseph Orofino, David A. Guertin, Susan K. Fried, Mi-Jeong Lee, M. Dafne Cardamone, and Valentina Perissi

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Nrg4 promotes fuel oxidation and a healthy adipokine profile to ameliorate diet-induced metabolic disorders, Zhimin Chen, Guo-Xiao Wang, Sara L. Ma, Dae Young Jung, Hyekyung Ha, Tariq Altamimi, Xu-Yun Zhao, Liang Guo, Peng Zhang, Chun-Rui Hu, Ji-Xin Cheng, Gary D. Lopaschuk, Jason K. Kim, and Jiandie D. Lin

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The role of RNA uptake in platelet heterogeneity, Lauren Clancy, Lea M. Beaulieu, Kahraman Tanriverdi, and Jane E. Freedman

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Insulin action and resistance in obesity and type 2 diabetes, Michael P. Czech

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Cardiometabolic disease in South Asians: A global health concern in an expanding population, A. Das, B. Ambale-Venkatesh, J. A. C. Lima, Jane E. Freedman, A. Spahillari, R. Das, S. Das, R. V. Shah, and V. L. Murthy

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Melanoma mystery, Roger J. Davis

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Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis, Michael A. DeJesus, Elias R. Gerrick, Weizhen Xu, Sae Woong. Park, Jarukit E. Long, Cara C. Boutte, Eric J. Rubin, Dirk Schnappinger, Sabine Ehrt, Sarah M. Fortune, Christopher M. Sassetti, and Thomas R. Ioerger

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Statistical analysis of genetic interactions in Tn-Seq data, Michael A. DeJesus, Subhalaxmi Nambi, Clare M. Smith, Richard E. Baker, Christopher M. Sassetti, and Thomas R. Ioerger

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JAK/STAT pathway inhibition overcomes IL7-induced glucocorticoid resistance in a subset of human T-cell acute lymphoblastic leukemias, C. Delgado-Martin, L. K. Meyer, B. J. Huang, M. S. Zinter, J. V. Nguyen, G. A. Smith, J. Taunton, S. S. Winter, Justine R. Roderick, Michelle A. Kelliher, T. M. Horton, B. L. Wood, D. T. Teachey, and M. L. Hermiston

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Mitochondrial dysfunction in cancer: Potential roles of ATF5 and the mitochondrial UPR, Pan Deng and Cole M. Haynes

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Integrating the UPRmt into the mitochondrial maintenance network, Christopher J. Fiorese and Cole M. Haynes

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Challenges and Opportunities in Linking Long Noncoding RNAs to Cardiovascular, Lung, and Blood Diseases, Jane E. Freedman; Joseph M. Miano; and National Heart, Lung, and Blood Institute Workshop Participants

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Vitiligo: Mechanistic Insights Lead to Novel Treatments, Michael L. Frisoli and John E. Harris

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Extracellular vesicle isolation: present and future, Istvan Furi, Fatemeh Momen-Heravi, and Gyongyi Szabo

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Molecular definitions of autophagy and related processes, Lorenzo Galluzzi, Eric H. Baehrecke, and Guido Kroemer

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Molecular and functional analysis of the mce4 operon in Mycobacterium smegmatis, Julia Garcia-Fernandez, Kadamba Papavinasasundaram, Beatriz Galan, Christopher M. Sassetti, and Jose L. Garcia

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Unravelling the pleiotropic role of the MceG ATPase in Mycobacterium smegmatis, Julia Garcia-Fernandez, Kadamba Papavinasasundaram, Beatriz Galan, Christopher M. Sassetti, and Jose L. Garcia

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Bacterial Metabolism Affects the C. elegans Response to Cancer Chemotherapeutics, Aurian Garcia-Gonzalez, Ashlyn D. Ritter, Shaleen Shrestha, Erik C. Andersen, L. Safak Yilmaz, and Albertha J. M. Walhout

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Central Role of IL-23 and IL-17 Producing Eosinophils as Immunomodulatory Effector Cells in Acute Pulmonary Aspergillosis and Allergic Asthma, Evelyn V. Santos Guerra, Chrono K. Lee, Charles A. Specht, Bhawna Yadav, Haibin Huang, Ali Akalin, Jun R. Huh, Christian Mueller, and Stuart M. Levitz

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Adipocyte lipid synthesis coupled to neuronal control of thermogenic programming, Adilson L. Guilherme, David J. Pedersen, Elizabeth Henchey, Felipe S. Henriques, Laura V. Danai, Yuefei Shen, Batuhan Yenilmez, Dae Young Jung, Jason K. Kim, Irfan J. Lodhi, Clay F. Semenkovich, and Michael P. Czech

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Sepsis in Alcohol-related Liver Disease, Thierry Gustot, Javier Fernandez, Gyongyi Szabo, Agustin Albillos, Alexandre Louvet, Rajiv Jalan, Richard Moreau, and Christophe Moreno

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Chemical-Induced Vitiligo, John E. Harris

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Optimizing Vitiligo Management: Past, Present, and Future, John E. Harris

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Intranuclear and higher-order chromatin organization of the major histone gene cluster in breast cancer, Deli Hong, A. Rasim Barutcu, and Anthony N. Imbalzano

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The Oxidative Stress Response in Caenorhabditis elegans Requires the GATA Transcription Factor ELT-3 and SKN-1/Nrf2, Queenie Hu, Dayana R. D'Amora, Lesley T. MacNeil, Albertha J. M. Walhout, and Terrance J. Kubiseski (Genetics, 6-9-2017)

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Interleukin-1 inhibition facilitates recovery from liver injury and promotes regeneration of hepatocytes in alcoholic hepatitis in mice, Arvin Iracheta-Vellve, Jan Petrasek, Benedek Gyongyosi, Shashi Bala, Timea Csak, Karen Kodys, and Gyongyi Szabo

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Integrated genome-wide analysis of expression quantitative trait loci aids interpretation of genomic association studies, Roby Joehanes, Kahraman Tanriverdi, Jane E. Freedman, and Peter J. Munson

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Developmental Role of Macrophage Cannabinoid-1 Receptor Signaling in Type 2 Diabetes, Tony Jourdan, Gergo Szanda, Resat Cinar, Grzegorz Godlewski, David J. Holovac, Joshua K. Park, Sarah M. Nicoloro, Yuefei Shen, Jie Liu, Avi Z. Rosenberg, Ziyi Liu, Michael P. Czech, and George Kunos

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CHIP-ping Away at Atherosclerosis, John F. Keaney Jr.

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Thrombosis and platelets: an update, Milka Koupenova-Zamor, Beate E. Kehrel, Heather A. Corkrey, and Jane E. Freedman

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The Complex Roles of Mechanistic Target of Rapamycin in Adipocytes and Beyond, Peter L. Lee, Su Myung Jung, and David A. Guertin

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CK2 inhibitor CX-4945 destabilizes NOTCH1 and synergizes with JQ1 against human T-acute lymphoblastic leukemic cells, Haiwei Lian, Dun Li, Yun Zhou, Esther Landesman-Bollag, Guanglan Zhang, Nicole M. Anderson, Kevin Charles. Tang, Justine E. Roderick, Michelle A. Kelliher, David C. Seldin, Hui Fu, and Hui Feng

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Peer Review Practices for Evaluating Biomedical Research Grants: A Scientific Statement From the American Heart Association, Lucy Liaw, Jane E. Freedman, Lance B. Becker, Nehal N. Mehta, and Laura Liscum

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Complement-Related Regulates Autophagy in Neighboring Cells, Lin Li, Frederico S. L. M. Rodrigues, Christina Kary, Alicia Contet, Mary Logan, Richard H. Baxter G, Will Wood, and Eric H. Baehrecke

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Short-Term Exposure to Ambient Air Pollution and Biomarkers of Systemic Inflammation: The Framingham Heart Study, Wenyuan Li, Kirsten S. Dorans, Elissa H. Wilker, Mary B. Rice, Petter L. Ljungman, Joel D. Schwartz, Brent A. Coull, Petros Koutrakis, Diane R. Gold, John F. Keaney Jr., Ramachandran S. Vasan, Emelia J. Benjamin, and Murray A. Mittleman

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Alcohol-related changes in the intestinal microbiome influence neutrophil infiltration, inflammation and steatosis in early alcoholic hepatitis in mice, Patrick Lowe, Benedek Gyongyosi, Abhishek Satishchandran, Arvin Iracheta-Vellve, Aditya Ambade, Karen Kodys, Donna Catalano, Doyle V. Ward, and Gyongyi Szabo

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Recovery of ethanol-induced Akkermansia muciniphila depletion ameliorates alcoholic liver disease, Patrick Lowe, Benedek Gyongyosi, Doyle V. Ward, and Gyongyi Szabo

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Partial clinical remission in type 1 diabetes: a comparison of the accuracy of total daily dose of insulin of <0.3 units/kg/day to the gold standard insulin-dose adjusted hemoglobin A1c of ≤9 for the detection of partial clinical remission, Rachel L. Lundberg, Katherine R. Marino, Aastha Jasrotia, Louise S. Maranda, Bruce A. Barton, Laura C. Alonso, and Benjamin U. Nwosu

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Visualization of self-delivering hydrophobically modified siRNA cellular internalization, Socheata Ly, Deanna M. Navaroli, Marie-Claire Didiot, James Cardia, Lakshmipathi Pandarinathan, Julia F. Alterman, Kevin E. Fogarty, Clive Standley, Lawrence Lifshitz, Karl D. Bellve, Matthieu Prot, Dimas Echeverria, Silvia Corvera, and Anastasia Khvorova

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Data from: A Predictive Model for Lack of Partial Clinical Remission in New-onset Pediatric Type 1 Diabetes, Katherine R. Marino, Rachel L. Lundberg, Aastha Jasrotia, Louise S. Maranda, Michael J. Thompson, Bruce A. Barton, Laura C. Alonso, and Benjamin U. Nwosu

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A predictive model for lack of partial clinical remission in new-onset pediatric type 1 diabetes, Katherine R. Marino, Rachel L. Lundberg, Aastha Jasrotia, Louise Maranda, Michael J. Thompson, Bruce A. Barton, Laura C. Alonso, and Benjamin U. Nwosu

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Hypothalamic AMPK-ER Stress-JNK1 Axis Mediates the Central Actions of Thyroid Hormones on Energy Balance, Noelia Martinez-Sanchez, Roger J. Davis, and Miguel Lopez

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Human white adipocytes convert into "rainbow" adipocytes in vitro, Giulia Maurizi, Antonella Poloni, Silvia Corvera, and Saverio Cinti

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Messenger RNA and MicroRNA transcriptomic signatures of cardiometabolic risk factors, David D. McManus, Jian Rong, Tianxiao Huan, Sean Lacey, Kahraman Tanriverdi, Peter J. Munson, Martin G. Larson, Roby Joehanes, Venkatesh Murthy, Ravi Shah, Jane E. Freedman, and Daniel Levy

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Differential involvement of the microtubule cytoskeleton in insulin receptor substrate 1 (IRS-1) and IRS-2 signaling to AKT determines the response to microtubule disruption in breast carcinoma cells, Jose Mercado-Matos, Jennifer L. Clark, Andrew J. Piper, Jenny Janusis, and Leslie M. Shaw

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RUNX1 and breast cancer, Jose Mercado-Matos, Asia N. Matthew-Onabanjo, and Leslie M. Shaw

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Stroke and Circulating Extracellular RNAs, Eric O. Mick, Ravi Shah, Kahraman Tanriverdi, Venkatesh Murthy, Mark Gerstein, Joel Rozowsky, Robert Kitchen, Martin G. Larson, Daniel Levy, and Jane E. Freedman

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Nitric oxide prevents a pathogen-permissive granulocytic inflammation during tuberculosis, Bibhuti B. Mishra, Rustin R. Lovewell, Andrew J. Olive, Clare M. Smith, Jia Yao Phuah, Jarukit E. Long, Michelle L. Dubuke, Samantha G. Palace, Jon D. Goguen, Richard E. Baker, Subhalaxmi Nambi, Rabinarayan Mishra, Matthew G. Booty, Christina E. Baer, Scott A. Shaffer, Beth A. McCormick, and Christopher M. Sassetti

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The Vitiligo Working Group recommendations for narrowband ultraviolet B light phototherapy treatment of vitiligo, Tasneem F. Mohammad, Mohammed Al-Jamal, Iltefat H. Hamzavi, John E. Harris, Giovanni Leone, Raul Cabrera, Henry W. Lim, Amit G. Pandya, and Amit Pandya

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Cross-sectional relations of whole-blood miRNA expression levels and hand grip strength in a community sample, Joanne M. Murabito, Jian Rong, Kathryn L. Lunetta, Tianxiao Huan, Honghuang Lin, Qiang Zhao, Jane E. Freedman, Kahraman Tanriverdi, Daniel Levy, and Martin G. Larson

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Mitochondrial retrograde signaling connects respiratory capacity to thermogenic gene expression, Minwoo Nam, Thomas E. Akie, Masato Sanosaka, Siobhan M. Craige, Shashi Kant, John F. Keaney Jr., and Marcus P. Cooper

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Mammalian SWI/SNF Enzymes and the Epigenetics of Tumor Cell Metabolic Reprogramming, Jeffrey A. Nickerson, Qiong Wu, and Anthony N. Imbalzano

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Rod Outer Segment Development Influences AAV-Mediated Photoreceptor Transduction After Subretinal Injection, Lolita Petit, Shan Ma, Shun-Yun Cheng, Guangping Gao, and Claudio Punzo

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The mitochondrial unfolded protein response: Signaling from the powerhouse, Mohammed A. Qureshi, Cole M. Haynes, and Mark W. Pellegrino

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Vitiligo Pathogenesis and Emerging Treatments, Medhi Rashighi and John E. Harris

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Keratinocyte-Derived Chemokines Orchestrate T-Cell Positioning in the Epidermis during Vitiligo and May Serve as Biomarkers of Disease, Jillian M. Richmond, Dinesh S. Bangari, Kingsley I. Essien, Sharif D. Currimbhoy, Joanna R. Groom, Amit G. Pandya, Michele E. Youd, Andrew D. Luster, and John E. Harris

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CXCR3 Depleting Antibodies Prevent and Reverse Vitiligo in Mice, Jillian M. Richmond, Elizabeth Masterjohn, Ruiyin Chu, Jennifer Tedstone, Michele E. Youd, and John E. Harris

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Programmable transcriptional repression in mycobacteria using an orthogonal CRISPR interference platform, Jeremy M. Rock, Forrest F. Hopkins, Alejandro Chavez, Marieme Diallo, Michael R. Chase, Elias R. Gerrick, Justin R. Pritchard, George M. Church, Eric J. Rubin, Christopher M. Sassetti, Dirk Schnappinger, and Sarah M. Fortune

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Current and emerging treatments for vitiligo, Michelle Rodrigues, Khaled Ezzedine, Iltefat Hamzavi, Amit G. Pandya, and John E. Harris

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New discoveries in the pathogenesis and classification of vitiligo, Michelle Rodrigues, Khaled Ezzedine, Iltefat Hamzavi, Amit G. Pandya, and John E. Harris

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MAP4K4 impairs energy metabolism in endothelial cells and promotes insulin resistance in obesity, Rachel J. Roth Flach, Marina T. DiStefano, Laura V. Danai, Ozlem Senol-Cosar, Joseph C. Yawe, Mark Kelly, Lorena Garcia Menendez, and Michael P. Czech

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Joint analysis of left ventricular expression and circulating plasma levels of Omentin after myocardial ischemia, Louis A. Saddic, Sarah M. Nicoloro, Olga T. Gupta, Michael P. Czech, Joshua Gorham, Stanton K. Shernan, Christine E. Seidman, Jon G. Seidman, Sary F. Aranki, Simon C. Body, Timothy P. Fitzgibbons, and Jochen D. Muehlschlegel

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Circulating and Exosome-Packaged Hepatitis C Single-Stranded RNA Induce Monocyte Differentiation via TLR7/8 to Polarized Macrophages and Fibrocytes, Banishree Saha, Karen Kodys, Adeyinka Adejumo, and Gyongyi Szabo

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Amplification of Adipogenic Commitment by VSTM2A, Blandine Secco, Peter L. Lee, David A. Guertin, and Mathieu Laplante

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Extracellular RNAs Are Associated With Insulin Resistance and Metabolic Phenotypes, Ravi Shah, Venkatesh Murthy, Kahraman Tanriverdi, Eric O. Mick, and Jane E. Freedman

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Extracellular RNAs Are Associated With Insulin Resistance and Metabolic Phenotypes, Ravi Shah, Venkatesh Murthy, Kahraman Tanriverdi, Eric O. Mick, and Jane E. Freedman

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Subclinical Atherosclerosis, Statin Eligibility, and Outcomes in African American Individuals: The Jackson Heart Study, Ravi V. Shah, Aferdita Spahillari, Stanford Mwasongwe, J. J. Carr, James G. Terry, Robert J. Mentz, Daniel Addison, Udo Hoffmann, Jared Reis, Jane E. Freedman, Joao A. C. Lima, Adolfo Correa, and Venkatesh L. Murthy

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Metabolic Inputs into the Epigenome, Upasna Sharma and Oliver J. Rando

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Interleukin-17: Why the Worms Squirm, Noah J. Silverstein and Jun R. Huh

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Decreased Thromboembolic Stroke but not Atherosclerosis or Vascular Remodeling in Mice with ROCK2-deficient Platelets, Nikola Sladojevic, Goo Taeg. Oh, Hyung-Hwan Kim, Lea M. Beaulieu, Herve Falet, Karol Kaminski, Jane E. Freedman, and James K. Liao

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Hyper- and hypo- nutrition studies of the hepatic transcriptome and epigenome suggest that PPARα regulates anaerobic glycolysis, Anthony R. Soltis, Shmulik Motola, Santiago Vernia, Christopher W. Ng, Norman J. Kennedy, Simona Dalin, Bryan J. Matthews, Roger J. Davis, and Ernest Fraenkel

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Ideal Cardiovascular Health, Cardiovascular Remodeling, and Heart Failure in Blacks: The Jackson Heart Study, Aferdita Spahillari, Jane E. Freedman, and Ravi V. Shah

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Suction blistering the lesional skin of vitiligo patients reveals useful biomarkers of disease activity, James P. Strassner, Medhi Rashighi, Maggi Ahmed Refat, Jillian M. Richmond, and John E. Harris

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Gingerenone A, a polyphenol present in ginger, suppresses obesity and adipose tissue inflammation in high-fat diet-fed mice, Sujin Suk, Gyoo Taik Kwon, Eunjung Lee, Woo Jung Jang, Hee Yang, Jong Hun Kim, N. R. Thimmegowda, Min-Yu Chung, Jung Yeon Kwon, Seunghee Yang, Jason K. Kim, Jung Han Park Yoon, and Ki Won Lee

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Extracellular vesicles in liver disease and potential as biomarkers and therapeutic targets, Gyongyi Szabo and Fatemeh Momen-Heravi

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Gut-liver axis and sterile signals in the development of alcoholic liver disease, Gyongyi Szabo and Jan Petrasek

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PRIMA: a gene-centered, RNA-to-protein method for mapping RNA-protein interactions, Alex M. Tamburino, Ebru Kaymak, Shaleen Shrestha, Amy D. Holdorf, Sean P. Ryder, and Albertha J. M. Walhout (Translation (Austin, Tex.), 2-28-2017)

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Kupffer Cell-Derived Tnf Triggers Cholangiocellular Tumorigenesis through JNK due to Chronic Mitochondrial Dysfunction and ROS, Technische Universitat München, Roger J. Davis, and Mathias Heikenwalder

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Paternal nicotine exposure alters hepatic xenobiotic metabolism in offspring, Markus P. Vallaster, Shweta Kukreja, Xin Y. Bing, Jennifer Ngolab, Rubing Zhao-Shea, Paul D. Gardner, Andrew R. Tapper, and Oliver J. Rando

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A double-blind, placebo-controlled, phase-II clinical trial to evaluate oral simvastatin as a treatment for vitiligo, Stefan G. Vanderweil, Shinya U. Amano, Wei-Che Ko, Jillian M. Richmond, Michelle Kelley, Maryanne Makredes Senna, Andrea Pearson, Sandhya Chowdary, Celia Hartigan, Bruce A. Barton, and John E. Harris

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BET Bromodomain Proteins Function as Master Transcription Elongation Factors Independent of CDK9 Recruitment, Georg E. Winter, Justine E. Roderick, Michelle A. Kelliher, and James E. Bradner

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c-Jun N-terminal kinases (JNKs) are critical mediators of osteoblast activity in vivo, Ren Xu, Chao Zhang, Dong Yeon Shin, Jung-Min Kim, Sarfaraz Lalani, Na Li, Yeon-Suk Yang, Yifang Liu, Mark Eiseman, Roger J. Davis, Jae-Hyuck Shim, and Matthew B. Greenblatt

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Dynamic Role of trans Regulation of Gene Expression in Relation to Complex Traits, Chen Yao, Roby Joehanes, Andrew D. Johnson, Tianxiao Huan, Chunyu Liu, Jane E. Freedman, Peter J. Munson, David A. Hill, Marc Vidal, and Daniel Levy

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Metabolic network modeling with model organisms, L. Safak Yilmaz and Albertha J. M. Walhout (Current opinion in chemical biology, 2-1-2017)

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Association of Parental Obesity and Diabetes Mellitus With Circulating Adipokines in Nonobese Nondiabetic Offspring, Justin P. Zachariah, Rene Quiroz, Danielle Enserro, Charlotte Andersson, John F. Keaney Jr., Lisa M. Sullivan, and Ramachandran S. Vasan

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Prospective Relation of Circulating Adipokines to Incident Metabolic Syndrome: The Framingham Heart Study, Justin P. Zachariah, Rene Quiroz, Kerrie P. Nelson, Zhaoyang Teng, John F. Keaney Jr., Lisa M. Sullivan, and Ramachandran S. Vasan

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C. elegans and its bacterial diet as a model for systems-level understanding of host-microbiota interactions, Jing Zhang, Amy D. Holdorf, and Albertha J. M. Walhout (Current opinion in biotechnology, 2-8-2017)

Publications from 2016

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Adult mouse model of early hepatocellular carcinoma promoted by alcoholic liver disease, Aditya Ambade, Abhishek Satishchandran, Benedek Gyongyosi, Patrick Lowe, and Gyongyi Szabo

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Hepatocellular carcinoma is accelerated by NASH involving M2 macrophage polarization mediated by hif-1alphainduced IL-10, Aditya Ambade, Abhishek Satishchandran, Banishree Saha, Benedek Gyongyosi, Patrick Lowe, Karen Kodys, Donna Catalano, and Gyongyi Szabo

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Alcoholic hepatitis accelerates early hepatobiliary cancer by increasing stemness and miR-122-mediated HIF-1alpha activation, Aditya Ambade, Abhishek Satishchandran, and Gyongyi Szabo

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The TCA cycle transferase DLST is important for MYC-mediated leukemogenesis, N. M. Anderson, Michelle A. Kelliher, and H. Feng

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The pro-inflammatory effects of miR-155 promote liver fibrosis and alcohol-induced steatohepatitis, Shashi Bala, Timea Csak, Banishree Saha, James Zatsiorsky, Karen Kodys, Donna Catalano, Abhishek Satishchandran, and Gyongyi Szabo

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Hepatic steatosis is associated with cardiometabolic risk in a rural Indian population: A prospective cohort study, Anamitra Barik, Jane E. Freedman, and Abhijit Chowdhury

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C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization; UMass Metabolic Network, Ahmet Rasim Barutcu, Andrew J. Fritz, Sayyed K. Zaidi, Andre J. van Wijnen, Jane B. Lian, Janet L. Stein, Jeffrey A. Nickerson, Anthony N. Imbalzano, and Gary S. Stein (Journal of cellular physiology)

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RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells, A. Rasim Barutcu, Deli Hong, Bryan R. Lajoie, Rachel Patton McCord, Andre J. van Wijnen, Jane B. Lian, Janet L. Stein, Job Dekker, Anthony N. Imbalzano, and Gary S. Stein (Biochimica et biophysica acta)

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SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells, A. Rasim Barutcu, Bryan R. Lajoie, Andrew J. Fritz, Rachel P. McCord, Jeffrey A. Nickerson, Andre J. van Wijnen, Jane B. Lian, Janet L. Stein, Job Dekker, Gary S. Stein, and Anthony N. Imbalzano (Genome research)