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<title>Jones Lab</title>
<copyright>Copyright (c) 2013 University of Massachusetts Medical School All rights reserved.</copyright>
<link>http://escholarship.umassmed.edu/jones</link>
<description>Recent documents in Jones Lab</description>
<language>en-us</language>
<lastBuildDate>Thu, 16 May 2013 11:34:46 PDT</lastBuildDate>
<ttl>3600</ttl>








<item>
<title>ATM phosphorylation of Mdm2 Ser394 regulates the amplitude and duration of the DNA damage response in mice</title>
<link>http://escholarship.umassmed.edu/jones/27</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/27</guid>
<pubDate>Thu, 04 Oct 2012 09:00:34 PDT</pubDate>
<description>
	<![CDATA[
	<p>DNA damage induced by ionizing radiation activates the ATM kinase, which subsequently stabilizes and activates the p53 tumor suppressor protein. Although phosphorylation of p53 by ATM was found previously to modulate p53 levels and transcriptional activities in vivo, it does not appear to be a major regulator of p53 stability. We have utilized mice bearing altered Mdm2 alleles to demonstrate that ATM phosphorylation of Mdm2 serine 394 is required for robust p53 stabilization and activation after DNA damage. In addition, we demonstrate that dephosphorylation of Mdm2 Ser394 regulates attenuation of the p53-mediated response to DNA damage. Therefore, the phosphorylation status of Mdm2 Ser394 governs p53 protein levels and functions in cells undergoing DNA damage.</p>

	]]>
</description>

<author>Hugh S. Gannon et al.</author>


<category>Animals</category>

<category>Apoptosis</category>

<category>Cell Cycle Proteins</category>

<category>*DNA Damage</category>

<category>DNA-Binding Proteins</category>

<category>Enzyme Activation</category>

<category>Intestine, Small</category>

<category>Mice</category>

<category>Mice, 129 Strain</category>

<category>Mice, Inbred C57BL</category>

<category>Mutation, Missense</category>

<category>Phosphorylation</category>

<category>Protein Stability</category>

<category>Protein-Serine-Threonine Kinases</category>

<category>Proto-Oncogene Proteins c-mdm2</category>

<category>Radiation Tolerance</category>

<category>Serine</category>

<category>Spleen</category>

<category>Thymus Gland</category>

<category>Time Factors</category>

<category>Tumor Suppressor Protein p53</category>

<category>Tumor Suppressor Proteins</category>

</item>






<item>
<title>WNT5A signaling affects pituitary gland shape</title>
<link>http://escholarship.umassmed.edu/jones/25</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/25</guid>
<pubDate>Fri, 28 Jan 2011 07:36:40 PST</pubDate>
<description>
	<![CDATA[
	<p>Wnt signaling is important in organogenesis, and aberrant signaling in mature cells is associated with tumorigenesis. Several members of the Wnt family of signaling molecules are expressed in the developing pituitary gland. Wnt5a is expressed in the neuroectoderm that induces pituitary gland development and has been proposed to influence pituitary cell specification. We discovered that mice deficient in Wnt5a display abnormal morphology in the dorsal part of the developing pituitary. The expression of downstream effectors of the canonical Wnt pathway is not altered, and expression of genes in other signaling pathways such as Shh, Fgf8, Fgf10 and Fgfr2b is intact. Prop1 and Hesx1 are also important for normal shape of the pituitary primordium, but their expression is unaltered in the Wnt5a mutants. Specification of the hormone-producing cell types of the mature anterior pituitary gland occurs appropriately. This study suggests that the primary role of Wnt5a in the developing pituitary gland is in establishment of the shape of the gland.</p>

	]]>
</description>

<author>Kelly B. Cha et al.</author>


<category>Animals</category>

<category>Base Sequence</category>

<category>Body Patterning</category>

<category>Cell Death</category>

<category>Cell Division</category>

<category>DNA</category>

<category>Gene Expression Regulation, Developmental</category>

<category>Mice</category>

<category>Mice, Inbred C57BL</category>

<category>Mice, Knockout</category>

<category>Pituitary Gland</category>

<category>Proto-Oncogene Proteins</category>

<category>Signal Transduction</category>

<category>Transcription Factors</category>

<category>Wnt Proteins</category>

</item>






<item>
<title>Loss of the INI1 tumor suppressor does not impair the expression of multiple BRG1-dependent genes or the assembly of SWI/SNF enzymes</title>
<link>http://escholarship.umassmed.edu/jones/24</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/24</guid>
<pubDate>Fri, 28 Jan 2011 07:36:39 PST</pubDate>
<description>
	<![CDATA[
	<p>The INI1/hSNF5 tumor suppressor is an integral component of mammalian SWI/SNF chromatin remodeling enzymes that contain SNF2 family ATPases BRM (Brahma) or BRG1 (Brahma Related Gene 1) and that contribute to the regulation of many genes. Genetic studies of yeast SWI/SNF enzyme revealed similar phenotypes when single or multiple components of the enzyme were deleted, indicating a requirement for each subunit. To address the contribution of INI1 in the regulation of SWI/SNF-dependent genes in mammalian cells, we examined the expression of multiple BRG1-dependent, constitutively expressed genes in INI1-deficient cancer cell lines. At least one INI1-deficient line expressed each gene, and reintroduction of INI1 had negligible effects on expression levels. Lack of INI1 also did not prevent interferon gamma (IFNgamma)-mediated induction of CIITA, which is BRG1 dependent, and GBP-1, which is BRG1 enhanced, and reintroduction of INI1 had minimal effects. Chromatin immunoprecipitation experiments revealed that BRG1 inducibly binds to the CIITA promoter despite the absence of INI1. Unlike yeast deleted for the INI1 homologue, SWI/SNF enzymes in INI1-deficient cells were largely intact. Thus in human cells, SWI/SNF enzyme complex formation and the expression of many BRG1-dependent genes are independent of INI1.</p>

	]]>
</description>

<author>Diem N. Doan et al.</author>


<category>Animals</category>

<category>Cell Line</category>

<category>Chromosomal Proteins, Non-Histone</category>

<category>DNA Helicases</category>

<category>DNA-Binding Proteins</category>

<category> *GTP-Binding Proteins</category>

<category> *Gene Expression Regulation</category>

<category> *Genes, Tumor Suppressor</category>

<category>Humans</category>

<category>Interferon-gamma</category>

<category>Nuclear Proteins</category>

<category>Proteins</category>

<category>Rabbits</category>

<category>Trans-Activators</category>

<category>Transcription Factors</category>

</item>






<item>
<title>Genomic organisation of the human MDM2 oncogene and relationship to its alternatively spliced mRNAs</title>
<link>http://escholarship.umassmed.edu/jones/23</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/23</guid>
<pubDate>Fri, 28 Jan 2011 07:36:37 PST</pubDate>
<description>
	<![CDATA[
	<p>The MDM2 proto-oncogene, which encodes a protein that binds to the p53 tumour suppressor, has been found amplified and overexpressed in a range of human tumours. Although the human MDM2 cDNA sequence has been reported, the genomic organisation of the human gene has not been documented. We have previously reported the detection of five alternative internally deleted MDM2 transcripts in human tumours and suggested these may represent alternatively spliced forms. Here we demonstrate two novel MDM2 transcripts with internal deletions, using RT-PCR followed by sequencing. To definitively ascribe these variant transcript forms to alternative splicing, and to explore associated mechanisms, we have determined the intron--exon organisation of the human genomic sequence. The human MDM2 gene spans approximately 33 kb and is divided into 12 exons. Exon sizes range from 50 to > or =1161 bp and intron sizes vary from 121 to approximately 7000 bp. The positions of intron--exon boundaries are compared with the deletion junctions of the multiple-sized transcripts and discussed in relation to alternative splicing mechanism.</p>

	]]>
</description>

<author>Huiling Liang et al.</author>


<category>*Alternative Splicing</category>

<category>Base Sequence</category>

<category>DNA</category>

<category>DNA, Complementary</category>

<category>Exons</category>

<category>Gene Expression Regulation, Neoplastic</category>

<category>Genes</category>

<category>Humans</category>

<category>Introns</category>

<category>Molecular Sequence Data</category>

<category>Nuclear Proteins</category>

<category>Proto-Oncogene Proteins</category>

<category>Proto-Oncogene Proteins c-mdm2</category>

<category>RNA, Messenger</category>

<category>Sequence Analysis, DNA</category>

<category>Urinary Bladder Neoplasms</category>

</item>






<item>
<title>Mammalian SNM1 is required for genome stability</title>
<link>http://escholarship.umassmed.edu/jones/22</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/22</guid>
<pubDate>Fri, 28 Jan 2011 07:36:36 PST</pubDate>
<description>
	<![CDATA[
	<p>The protein encoded by SNM1 in Saccharomyces cerevisiae has been shown to act specifically in DNA interstrand crosslinks (ICL) repair. There are five mammalian homologs of SNM1, including Artemis, which is involved in V(D)J recombination. Cells from mice constructed with a disruption in the Snm1 gene are sensitive to the DNA interstrand crosslinker, mitomycin (MMC), as indicated by increased radial formation following exposure. The mice reproduce normally and have normal life spans. However, a partial perinatal lethality, not seen in either homozygous mutant alone, can be noted when the Snm1 disruption is combined with a Fancd2 disruption. To explore the role of hSNM1 and its homologs in ICL repair in human cells, we used siRNA depletion in human fibroblasts, with cell survival and chromosome radials as the end points for sensitivity following treatment with MMC. Depletion of hSNM1 increases sensitivity to ICLs as detected by both end points, while depletion of Artemis does not. Thus hSNM1 is active in maintenance of genome stability following ICL formation. To evaluate the epistatic relationship between hSNM1 and other ICL repair pathways, we depleted hSNM1 in Fanconi anemia (FA) cells, which are inherently sensitive to ICLs. Depletion of hSNM1 in an FA cell line produces additive sensitivity for MMC. Further, mono-ubiquitination of FANCD2, an endpoint of the FA pathway, is not disturbed by depletion of hSNM1 in normal cells. Thus, hSNM1 appears to represent a second pathway for genome stability, distinct from the FA pathway.</p>

	]]>
</description>

<author>A. W. Hemphill et al.</author>


<category>Animals</category>

<category>DNA Repair</category>

<category>DNA Repair Enzymes</category>

<category>Endodeoxyribonucleases</category>

<category>Fanconi Anemia</category>

<category>Fanconi Anemia Complementation Group D2 Protein</category>

<category>Fibroblasts</category>

<category> *Genomic Instability</category>

<category>Humans</category>

<category>Mice</category>

<category>Mice, Transgenic</category>

<category>Nuclear Proteins</category>

<category>RNA, Small Interfering</category>

<category>Transfection</category>

</item>






<item>
<title>Snf5 tumor suppressor couples chromatin remodeling, checkpoint control, and chromosomal stability</title>
<link>http://escholarship.umassmed.edu/jones/21</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/21</guid>
<pubDate>Fri, 28 Jan 2011 07:36:34 PST</pubDate>
<description>
	<![CDATA[
	<p>SNF5 is a core subunit of the SWI/SNF chromatin-remodeling complex. Mammalian SNF5 is essential for normal cell viability, and loss or mutation of the human SNF gene is the molecular basis for familial malignant rhabdoid tumorigenesis. Previous studies have suggested that SNF5 suppresses cancer by signaling through the p16Ink4a and retinoblastoma tumor suppressors to negatively regulate cell cycle progression from G0/G1 into S phase. A recent paper in Genes and Development (Vries et al., 2005) reports that human SNF5 also signals via the p16INK4a-Rb-E2F pathway to regulate chromosomal stability, suggesting a new function for this chromatin remodeling protein in tumor suppression.</p>

	]]>
</description>

<author>Anthony N. Imbalzano et al.</author>


<category>Aneuploidy</category>

<category>Animals</category>

<category>Cell Cycle</category>

<category>Cell Cycle Proteins</category>

<category>Chromatin Assembly and Disassembly</category>

<category>Chromosomal Instability</category>

<category>Chromosomal Proteins, Non-Histone</category>

<category>Cyclin D1</category>

<category>Cyclin-Dependent Kinase 4</category>

<category>Cyclin-Dependent Kinase Inhibitor p16</category>

<category>Cyclin-Dependent Kinases</category>

<category>DNA-Binding Proteins</category>

<category>E2F Transcription Factors</category>

<category>Humans</category>

<category>Models, Biological</category>

<category>Phosphorylation</category>

<category>Polyploidy</category>

<category>Proto-Oncogene Proteins</category>

<category>Retinoblastoma Protein</category>

<category>Rhabdoid Tumor</category>

<category>Transcription Factors</category>

<category>Tumor Suppressor Proteins</category>

</item>






<item>
<title>Coxsackievirus and adenovirus receptor is essential for cardiomyocyte development</title>
<link>http://escholarship.umassmed.edu/jones/20</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/20</guid>
<pubDate>Fri, 28 Jan 2011 07:36:33 PST</pubDate>
<description>
	<![CDATA[
	<p>The coxsackievirus and adenovirus receptor (CAR) is a transmembrane protein that is known to be a site of viral attachment and entry, but its physiologic functions are undefined. CAR expression is maximal in neonates and wanes rapidly after birth in organs such as heart, muscle, and brain, suggesting that CAR plays a role in the development of these tissues. Here, we show that CAR deficiency resulted in an embryonic lethal condition associated with cardiac defects. Specifically, commencing approximately 10.5 days postconception (dpc), CAR-/- cardiomyocytes exhibited regional apoptosis evidenced by both histopathologic features of cell death and positive staining for the apoptotic marker cleaved caspase 3. CAR-/- fetuses invariably suffered from degeneration of the myocardial wall and thoracic hemorrhaging, leading to death by 11.5 dpc. These findings are consistent with the view that CAR provides positive survival signals to cardiomyocytes that are essential for normal heart development.</p>

	]]>
</description>

<author>Damon R. Asher et al.</author>


<category>Animals</category>

<category>Base Sequence</category>

<category>Chimera</category>

<category>Fetus</category>

<category>Gene Expression Regulation, Developmental</category>

<category>Genotype</category>

<category>Heart</category>

<category>Heart Defects, Congenital</category>

<category>In Situ Hybridization</category>

<category>Mice</category>

<category>Mice, Knockout</category>

<category>Molecular Sequence Data</category>

<category>Myocytes, Cardiac</category>

<category>RNA, Messenger</category>

<category>Receptors, Virus</category>

</item>






<item>
<title>Oncogenic function for the Dlg1 mammalian homolog of the Drosophila discs-large tumor suppressor</title>
<link>http://escholarship.umassmed.edu/jones/19</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/19</guid>
<pubDate>Fri, 28 Jan 2011 07:36:31 PST</pubDate>
<description>
	<![CDATA[
	<p>The fact that several different human virus oncoproteins, including adenovirus type 9 E4-ORF1, evolved to target the Dlg1 mammalian homolog of the membrane-associated Drosophila discs-large tumor suppressor has implicated this cellular factor in human cancer. Despite a general belief that such interactions function solely to inactivate this suspected human tumor suppressor protein, we demonstrate here that E4-ORF1 specifically requires endogenous Dlg1 to provoke oncogenic activation of phosphatidylinositol 3-kinase (PI3K) in cells. Based on our results, we propose a model wherein E4-ORF1 binding to Dlg1 triggers the resulting complex to translocate to the plasma membrane and, at this site, to promote Ras-mediated PI3K activation. These findings establish the first known function for Dlg1 in virus-mediated cellular transformation and also surprisingly expose a previously unrecognized oncogenic activity encoded by this suspected cellular tumor suppressor gene.</p>

	]]>
</description>

<author>Kristopher K. Frese et al.</author>


<category>1-Phosphatidylinositol 3-Kinase</category>

<category>Animals</category>

<category>Cell Membrane</category>

<category> *Cell Transformation, Viral</category>

<category>Genes, ras</category>

<category>Humans</category>

<category>Mice</category>

<category>Nerve Tissue Proteins</category>

<category>Oncogene Proteins, Viral</category>

<category>Protein Transport</category>

<category>Transfection</category>

<category>Tumor Suppressor Proteins</category>

</item>






<item>
<title>Nuclease sensitive element binding protein 1 gene disruption results in early embryonic lethality</title>
<link>http://escholarship.umassmed.edu/jones/18</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/18</guid>
<pubDate>Fri, 28 Jan 2011 07:36:30 PST</pubDate>
<description>
	<![CDATA[
	<p>Nuclease sensitive element binding protein 1 (NSEP1) is a member of the EFIA/NSEP1/YB-1 family of DNA-binding proteins whose members share a cold shock domain; it has also been termed DNA-binding protein B and Y box binding protein-1 because of its recognition of transcriptional regulatory elements. In addition, NSEP1 functions in the translational regulation of renin, ferritin, and interleukin 2 transcripts, and our laboratory has reported that it plays a role in the biosynthesis of selenium-containing proteins. To test the functional importance of NSEP1 in murine embryonic development, we have utilized a clone of ES cells in which the NSEP1 gene had been disrupted by integration of a plasmid gene-trapping vector into the seventh exon. Injection of these cells into C57BL/6 blastocysts resulted in 11 high percentage chimeric mice; crosses to wild type C57BL/6 mice generated 82 F1 agouti mice, indicating germ line transmission of the ES cell clone, but genotyping showed no evidence of the disrupted allele in any of these agouti offspring even though spermatozoa from four of five tested mice contained the targeted allele. Embryos harvested after timed matings of chimeric male mice demonstrated only the wildtype allele in 27 embryos tested at E7.5, E12.5, and E18.5. These results suggest that gene targeting of NSEP1 induces a lethal phenotype in early embryos, due to either haploinsufficiency of NSEP1 or formation of a dominant negative form of the protein. In either case, these data indicate the functional importance of the NSEP1 gene in murine early embryonic development.</p>

	]]>
</description>

<author>Lin Fan et al.</author>


<category>Animals</category>

<category>Blastocyst</category>

<category>Embryo Loss</category>

<category>Exons</category>

<category>Female</category>

<category> *Gene Expression Regulation, Developmental</category>

<category>Male</category>

<category>Mice</category>

<category>Mice, Inbred C57BL</category>

<category>Mice, Mutant Strains</category>

<category>Stem Cells</category>

<category>Y-Box-Binding Protein 1</category>

</item>






<item>
<title>The Wip1 Phosphatase acts as a gatekeeper in the p53-Mdm2 autoregulatory loop</title>
<link>http://escholarship.umassmed.edu/jones/17</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/17</guid>
<pubDate>Fri, 28 Jan 2011 07:36:28 PST</pubDate>
<description>
	<![CDATA[
	<p>The tumor suppressor p53 is a transcription factor that responds to cellular stresses by initiating cell cycle arrest or apoptosis. One transcriptional target of p53 is Mdm2, an E3 ubiquitin ligase that interacts with p53 to promote its proteasomal degradation in a negative feedback regulatory loop. Here we show that the wild-type p53-induced phosphatase 1 (Wip1), or PPM1D, downregulates p53 protein levels by stabilizing Mdm2 and facilitating its access to p53. Wip1 interacts with and dephosphorylates Mdm2 at serine 395, a site phosphorylated by the ATM kinase. Dephosphorylated Mdm2 has increased stability and affinity for p53, facilitating p53 ubiquitination and degradation. Thus, Wip1 acts as a gatekeeper in the Mdm2-p53 regulatory loop by stabilizing Mdm2 and promoting Mdm2-mediated proteolysis of p53.</p>

	]]>
</description>

<author>Xiongbin Lu et al.</author>


<category>Animals</category>

<category>Cell Cycle Proteins</category>

<category>Cell Line, Tumor</category>

<category>DNA Damage</category>

<category>DNA-Binding Proteins</category>

<category>Fibroblasts</category>

<category>Homeostasis</category>

<category>Humans</category>

<category>Mice</category>

<category>Mice, Knockout</category>

<category>Mutation</category>

<category>Osteosarcoma</category>

<category>Phosphoprotein Phosphatases</category>

<category>Phosphorylation</category>

<category>Proteasome Endopeptidase Complex</category>

<category>Protein-Serine-Threonine Kinases</category>

<category>Proto-Oncogene Proteins c-mdm2</category>

<category>RNA Interference</category>

<category>RNA, Small Interfering</category>

<category>Serine</category>

<category> *Signal Transduction</category>

<category>Time Factors</category>

<category>Transcription, Genetic</category>

<category>Transfection</category>

<category>Tumor Suppressor Protein p53</category>

<category>Tumor Suppressor Proteins</category>

<category>Ubiquitin</category>

<category>Ubiquitin Thiolesterase</category>

</item>






<item>
<title>The ER-bound RING finger protein 5 (RNF5/RMA1) causes degenerative myopathy in transgenic mice and is deregulated in inclusion body myositis</title>
<link>http://escholarship.umassmed.edu/jones/16</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/16</guid>
<pubDate>Fri, 28 Jan 2011 07:36:26 PST</pubDate>
<description>
	<![CDATA[
	<p>Growing evidence supports the importance of ubiquitin ligases in the pathogenesis of muscular disorders, although underlying mechanisms remain largely elusive. Here we show that the expression of RNF5 (aka RMA1), an ER-anchored RING finger E3 ligase implicated in muscle organization and in recognition and processing of malfolded proteins, is elevated and mislocalized to cytoplasmic aggregates in biopsies from patients suffering from sporadic-Inclusion Body Myositis (sIBM). Consistent with these findings, an animal model for hereditary IBM (hIBM), but not their control littermates, revealed deregulated expression of RNF5. Further studies for the role of RNF5 in the pathogenesis of s-IBM and more generally in muscle physiology were performed using RNF5 transgenic and KO animals. Transgenic mice carrying inducible expression of RNF5, under control of beta-actin or muscle specific promoter, exhibit an early onset of muscle wasting, muscle degeneration and extensive fiber regeneration. Prolonged expression of RNF5 in the muscle also results in the formation of fibers containing congophilic material, blue-rimmed vacuoles and inclusion bodies. These phenotypes were associated with altered expression and activity of ER chaperones, characteristic of myodegenerative diseases such as s-IBM. Conversely, muscle regeneration and induction of ER stress markers were delayed in RNF5 KO mice subjected to cardiotoxin treatment. While supporting a role for RNF5 Tg mice as model for s-IBM, our study also establishes the importance of RNF5 in muscle physiology and its deregulation in ER stress associated muscular disorders.</p>

	]]>
</description>

<author>Agnes Delaunay et al.</author>


<category>Animals</category>

<category>DNA-Binding Proteins</category>

<category>Gene Expression</category>

<category>Inclusion Bodies</category>

<category>Membrane Proteins</category>

<category>Mice</category>

<category>Mice, Transgenic</category>

<category>Muscular Diseases</category>

<category> *Myositis</category>

<category>Phenotype</category>

<category>Ubiquitin-Protein Ligases</category>

</item>






<item>
<title>Elevated Mdm2 expression induces chromosomal instability and confers a survival and growth advantage to B cells</title>
<link>http://escholarship.umassmed.edu/jones/15</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/15</guid>
<pubDate>Fri, 28 Jan 2011 07:36:25 PST</pubDate>
<description>
	<![CDATA[
	<p>Mdm2, a regulator of the p53 tumor suppressor, is frequently overexpressed in lymphomas, including lymphomas that have inactivated p53. However, the biological consequences of Mdm2 overexpression in lymphocytes are not fully resolved. Here, we report that increased expression of Mdm2 in B cells augmented proliferation and reduced susceptibility to p53-dependent apoptosis, which was due to inhibition of p53 and suppression of p21 expression. Notably, developing and mature B cells from Mdm2 transgenic mice had an increased frequency of chromosomal/chromatid breaks and/or aneuploidy. This Mdm2-mediated genome instability occurred at a similar frequency as that in B cells overexpressing the oncogene c-Myc, but the chromosomal instability was not further enhanced when Mdm2 and c-Myc were overexpressed together. Elevated Mdm2 expression alone increased the occurrence of B-cell transformation in vivo and cooperated with c-Myc overexpression, resulting in an acceleration of B-cell lymphomagenesis. In addition, the frequency of p53 mutations was reduced, but not eliminated, in lymphomas arising in Mdm2/Emu-myc double transgenic mice. Therefore, increased Mdm2 expression facilitated B-cell lymphomagenesis, in part, through regulation of p53 by altering B-cell proliferation and susceptibility to apoptosis, and by inducing chromosomal instability.</p>

	]]>
</description>

<author>P. Wang et al.</author>


<category>Animals</category>

<category>Apoptosis</category>

<category>Blotting, Southern</category>

<category>Blotting, Western</category>

<category>Cell Survival</category>

<category> *Chromosomal Instability</category>

<category>Female</category>

<category>Humans</category>

<category>Lymphoma, B-Cell</category>

<category>Male</category>

<category>Mice</category>

<category>Mice, Transgenic</category>

<category>Mutagenesis, Site-Directed</category>

<category>Precursor Cells, B-Lymphoid</category>

<category>Proto-Oncogene Proteins c-mdm2</category>

<category>Proto-Oncogene Proteins c-myc</category>

<category>Survival Rate</category>

<category>Tumor Suppressor Protein p53</category>

</item>






<item>
<title>ATM-mediated serine 72 phosphorylation stabilizes ribonucleotide reductase small subunit p53R2 protein against MDM2 to DNA damage</title>
<link>http://escholarship.umassmed.edu/jones/14</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/14</guid>
<pubDate>Fri, 28 Jan 2011 07:36:23 PST</pubDate>
<description>
	<![CDATA[
	<p>Ribonucleotide reductase small subunit p53R2 was identified as a p53 target gene that provides dNTP for DNA damage repair. However, the slow transcriptional induction of p53R2 in RNA may not be rapid enough for prompt DNA damage repair, which has to occur within a few hours of damage. Here, we demonstrate that p53R2 becomes rapidly phosphorylated at Ser(72) by ataxia telangiectasia mutated (ATM) within 30 min after genotoxic stress. p53R2, as well as its heterodimeric partner RRM1, are associated with ATM in vivo. Mutational studies further indicate that ATM-mediated Ser(72) phosphorylation is essential for maintaining p53R2 protein stability and conferring resistance to DNA damage. The mutation of Ser(72) on p53R2 to alanine results in the hyperubiquitination of p53R2 and reduces p53R2 stability. MDM2, a ubiquitin ligase for p53, interacts and facilitates ubiquitination of the S72A-p53R2 mutant more efficiently than WT-p53R2 after DNA damage in vivo. Our results strongly suggest a novel mechanism for the regulation of p53R2 activity via ATM-mediated phosphorylation at Ser(72) and MDM2-dependent turnover of p53R2 dephosphorylated at the same residue.</p>

	]]>
</description>

<author>Lufen Chang et al.</author>


<category>Cell Cycle Proteins</category>

<category> *DNA Damage</category>

<category>DNA Repair</category>

<category>DNA-Binding Proteins</category>

<category>Humans</category>

<category>Phosphorylation</category>

<category>Protein-Serine-Threonine Kinases</category>

<category>Proto-Oncogene Proteins c-mdm2</category>

<category>Ribonucleotide Reductases</category>

<category>Serine</category>

<category>Tumor Suppressor Proteins</category>

<category>Ultraviolet Rays</category>

</item>






<item>
<title>The ING gene family in the regulation of cell growth and tumorigenesis</title>
<link>http://escholarship.umassmed.edu/jones/13</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/13</guid>
<pubDate>Fri, 28 Jan 2011 07:36:22 PST</pubDate>
<description>
	<![CDATA[
	<p>The five members of the inhibitor of growth (ING) gene family have garnered significant interest due to their putative roles as tumor suppressors. However, the precise role(s) of these ING proteins in regulating cell growth and tumorigenesis remains uncertain. Biochemical and molecular biological analysis has revealed that all ING members encode a PHD finger motif proposed to bind methylated histones and phosphoinosital, and all ING proteins have been found as components of large chromatin remodeling complexes that also include histone acetyl transferase (HAT) and histone deacetylase (HDAC) enzymes, suggesting a role for ING proteins in regulating gene transcription. Additionally, the results of forced overexpression studies performed in tissue culture have indicated that several of the ING proteins can interact with the p53 tumor suppressor protein and/or the nuclear factor-kappa B (NF-kappaB) protein complex. As these ING-associated proteins play well-established roles in numerous cell processes, including DNA repair, cell growth and survival, inflammation, and tumor suppression, several models have been proposed that ING proteins act as key regulators of cell growth not only through their ability to modify gene transcription but also through their ability to alter p53 and NF-kappaB activity. However, these models have yet to be substantiated by in vivo experimentation. This review summarizes what is currently known about the biological functions of the five ING genes based upon in vitro experiments and recent mouse modeling efforts, and will highlight the potential impact of INGs on the development of cancer.</p>

	]]>
</description>

<author>Andrew H. Coles et al.</author>


<category>Animals</category>

<category>Apoptosis</category>

<category>Cell Movement</category>

<category> *Cell Proliferation</category>

<category>Chromatin Assembly and Disassembly</category>

<category>DNA Repair</category>

<category>Female</category>

<category>Gene Expression Regulation</category>

<category>Genome</category>

<category>Humans</category>

<category>Hypoxia-Inducible Factor 1, alpha Subunit</category>

<category>Mice</category>

<category> *Multigene Family</category>

<category>NF-kappa B</category>

<category>Neoplasms</category>

<category>Neovascularization, Physiologic</category>

<category>Protein Structure, Tertiary</category>

<category>Signal Transduction</category>

<category>Tumor Suppressor Protein p53</category>

<category>Tumor Suppressor Proteins</category>

</item>






<item>
<title>Phosphorylation and degradation of MdmX is inhibited by Wip1 phosphatase in the DNA damage response</title>
<link>http://escholarship.umassmed.edu/jones/12</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/12</guid>
<pubDate>Fri, 28 Jan 2011 07:36:20 PST</pubDate>
<description>
	<![CDATA[
	<p>MdmX and Mdm2 regulate p53 tumor suppressor functions by controlling p53 transcriptional activity and/or stability in cells exposed to DNA damage. Accumulating evidence indicates that ATM-mediated phosphorylation and degradation of Mdm2 and MdmX may be the initial driving force that induces p53 activity during the early phase of the DNA damage response. We have recently determined that a novel protein phosphatase, Wip1 (or PPM1D), contributes to p53 regulation by dephosphorylating Mdm2 to close the p53 activation loop initiated by the ATM/ATR kinases. In the present study, we determine that Wip1 directly dephosphorylates MdmX at the ATM-targeted Ser403 and indirectly suppresses phosphorylation of MdmX at Ser342 and Ser367. Wip1 inhibits the DNA damage-induced ubiquitination and degradation of MdmX, leading to the stabilization of MdmX and reduction of p53 activities. Our data suggest that Wip1 is an important component in the ATM-p53-MdmX regulatory loop.</p>

	]]>
</description>

<author>Xinna Zhang et al.</author>


<category>Animals</category>

<category>Blotting, Western</category>

<category>Bone Neoplasms</category>

<category>Cells, Cultured</category>

<category> *DNA Damage</category>

<category>Embryo, Mammalian</category>

<category>Fibroblasts</category>

<category>Humans</category>

<category>Luciferases</category>

<category>Mice</category>

<category>Mice, Knockout</category>

<category>Mutation</category>

<category>Osteosarcoma</category>

<category>Phosphoprotein Phosphatases</category>

<category>Phosphorylation</category>

<category>Proto-Oncogene Proteins c-mdm2</category>

<category>Transfection</category>

<category>Tumor Suppressor Protein p53</category>

<category>Ubiquitination</category>

</item>






<item>
<title>Phosphorylation of p53 serine 18 upregulates apoptosis to suppress Myc-induced tumorigenesis</title>
<link>http://escholarship.umassmed.edu/jones/11</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/11</guid>
<pubDate>Fri, 28 Jan 2011 07:36:18 PST</pubDate>
<description>
	<![CDATA[
	<p>ATM and p53 are critical regulators of the cellular DNA damage response and function as potent tumor suppressors. In cells undergoing ionizing radiation, ATM is activated by double-strand DNA breaks and phosphorylates the NH(2) terminus of p53 at serine residue 18. We have previously generated mice bearing an amino acid substitution at this position (p53S18A) and documented a role for p53 phosphorylation in DNA damage-induced apoptosis. In this present study, we have crossed E mu myc transgenic mice with our p53S18A mice to explore a role for ATM-p53 signaling in response to oncogene-induced tumorigenesis. Similar to DNA damage induced by ionizing radiation, expression of c-Myc in pre-B cells induces p53 serine 18 phosphorylation and Puma expression to promote apoptosis. E mu myc transgenic mice develop B-cell lymphoma more rapidly when heterozygous or homozygous for p53S18A alleles. However, E mu myc-induced tumorigenesis in p53S18A mice is slower than that observed in E mu myc mice deficient for either p53 or ATM, indicating that both p53-induced apoptosis and p53-induced growth arrest contribute to the suppression of B-cell lymphoma formation in E mu myc mice. These findings further reveal that oncogene expression and DNA damage activate the same ATM-p53 signaling cascade in vivo to regulate apoptosis and tumorigenesis.</p>

	]]>
</description>

<author>Hayla Karen Sluss et al.</author>


<category>Amino Acid Sequence</category>

<category>Animals</category>

<category>Animals, Genetically Modified</category>

<category>Apoptosis</category>

<category>Apoptosis Regulatory Proteins</category>

<category>Cell Cycle Proteins</category>

<category>Cell Transformation, Neoplastic</category>

<category>DNA Damage</category>

<category>DNA-Binding Proteins</category>

<category>Gene Expression Regulation, Neoplastic</category>

<category>Lymphoma, B-Cell</category>

<category>Mice</category>

<category>Mice, Inbred C57BL</category>

<category>Oncogenes</category>

<category>Phosphorylation</category>

<category>Protein-Serine-Threonine Kinases</category>

<category>Proto-Oncogene Proteins c-myc</category>

<category>Serine</category>

<category>Signal Transduction</category>

<category>Tumor Suppressor Protein p53</category>

<category>Tumor Suppressor Proteins</category>

<category>Up-Regulation</category>

</item>






<item>
<title>Definitive hematopoiesis requires Runx1 C-terminal-mediated subnuclear targeting and transactivation</title>
<link>http://escholarship.umassmed.edu/jones/10</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/10</guid>
<pubDate>Fri, 28 Jan 2011 07:36:17 PST</pubDate>
<description>
	<![CDATA[
	<p>Runx1 is a key hematopoietic transcription factor required for definitive hematopoiesis and is a frequent target of leukemia-related chromosomal translocations. The resulting fusion proteins, while retaining DNA binding activity, display loss of subnuclear targeting and associated transactivation functions encoded by the C-terminus of the protein. To define the precise contribution of the Runx1 C-terminus in development and leukemia, we created a knock-in mouse with a C-terminal truncation by introducing a single nucleic acid substitution in the native Runx1 locus. This mutation (Runx1(Q307X)) models genetic lesions observed in patients with leukemia and myeloproliferative disorders. The Runx1(Q307X) homozygous mouse exhibits embryonic lethality at E12.5 due to central nervous system hemorrhages and a complete lack of hematopoietic stem cell function. While able to bind DNA, Runx1(Q307X) is unable to activate target genes, resulting in deregulation of various hematopoietic markers. Thus, we demonstrate that the subnuclear targeting and transcriptional regulatory activities of the Runx1 C-terminus are critical for hematopoietic development. We propose that compromising the C-terminal functions of Runx1 is a common mechanism for the pathological consequences of a variety of somatic mutations and Runx1-related leukemic fusion proteins observed in human patients.</p>

	]]>
</description>

<author>Christopher R. Dowdy et al.</author>


<category>Animals</category>

<category>Cell Line, Tumor</category>

<category>Cell Nucleus</category>

<category>Core Binding Factor Alpha 2 Subunit</category>

<category>Crosses, Genetic</category>

<category>Embryo, Mammalian</category>

<category>Female</category>

<category>Gene Expression Regulation, Developmental</category>

<category>Genotype</category>

<category> *Hematopoiesis</category>

<category>Hematopoietic Stem Cells</category>

<category>Heterozygote</category>

<category>Humans</category>

<category>Male</category>

<category>Mice</category>

<category>Mutant Proteins</category>

<category>Mutation</category>

<category>Protein Binding</category>

<category>Protein Structure, Tertiary</category>

<category>Protein Transport</category>

<category>Structure-Activity Relationship</category>

<category>Transcriptional Activation</category>

</item>






<item>
<title>Dicer inactivation in osteoprogenitor cells compromises fetal survival and bone formation, while excision in differentiated osteoblasts increases bone mass in the adult mouse</title>
<link>http://escholarship.umassmed.edu/jones/9</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/9</guid>
<pubDate>Fri, 28 Jan 2011 07:36:13 PST</pubDate>
<description>
	<![CDATA[
	<p>MicroRNA attenuation of protein translation has emerged as an important regulator of mesenchymal cell differentiation into the osteoblast lineage. A compelling question is the extent to which miR biogenesis is obligatory for bone formation. Here we show conditional deletion of the Dicer enzyme in osteoprogenitors by Col1a1-Cre compromised fetal survival after E14.5. A mechanism was associated with the post-commitment stage of osteoblastogenesis, demonstrated by impaired ECM mineralization and reduced expression of mature osteoblast markers during differentiation of mesenchymal cells of ex vivo deleted Dicer(c/c). In contrast, in vivo excision of Dicer by Osteocalcin-Cre in mature osteoblasts generated a viable mouse with a perinatal phenotype of delayed bone mineralization which was resolved by 1 month. However, a second phenotype of significantly increased bone mass developed by 2 months, which continued up to 8 months in long bones and vertebrae, but not calvariae. Cortical bone width and trabecular thickness in Dicer(Deltaoc/Deltaoc) was twice that of Dicer(c/c) controls. Normal cell and tissue organization was observed. Expression of osteoblast and osteoclast markers demonstrated increased coupled activity of both cell types. We propose that Dicer generated miRs are essential for two periods of bone formation, to promote osteoblast differentiation before birth, and control bone accrual in the adult.</p>

	]]>
</description>

<author>Tripti Gaur et al.</author>


<category>Animals</category>

<category>Cell Aging</category>

<category> *Cell Differentiation</category>

<category>Collagen Type I</category>

<category>DEAD-box RNA Helicases</category>

<category>Embryo, Mammalian</category>

<category>Endoribonucleases</category>

<category>Genes, Lethal</category>

<category>Mice</category>

<category>Mice, Inbred Strains</category>

<category>Osteoblasts</category>

<category>Osteogenesis</category>

<category>RNA, Messenger</category>

<category>Stem Cells</category>

</item>






<item>
<title>Inhibitor of growth-4 promotes IkappaB promoter activation to suppress NF-kappaB signaling and innate immunity</title>
<link>http://escholarship.umassmed.edu/jones/8</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/8</guid>
<pubDate>Fri, 28 Jan 2011 07:36:11 PST</pubDate>
<description>
	<![CDATA[
	<p>Ing4 is a member of the inhibitor of growth (ING) family of chromatin-modifying proteins. Biochemical experiments indicate that Ing4 is a subunit of the HB01-JADE-hEAF6 histone acetyltransferase complex responsible for most nucleosomal histone H4 acetylation in eukaryotes, and transfection studies suggest that Ing4 may regulate a wide variety of cellular processes, including DNA repair, apoptosis, cell-cycle regulation, metastasis, angiogenesis, and tumor suppression. However, in vivo evidence for a physiological role for Ing4 in cell-growth regulation is lacking. We have generated Ing4-deficient mice to explore the role of Ing4 in development, tumorigenesis, and in NF-kappaB signaling. Ing4-null mice develop normally and are viable. Although mice deficient for Ing4 fail to form spontaneous tumors, they are hypersensitive to LPS treatment and display elevated cytokine responses. Macrophages isolated from Ing4-null mice have increased levels of nuclear p65/RelA protein, resulting in increased RelA binding to NF-kappaB target promoters and up-regulation of cytokine gene expression. However, increased promoter occupancy by RelA in LPS-stimulated, Ing4-null cells does not always correlate with increased NF-kappaB target-gene expression, as RelA activation of a subset of cytokine promoters also requires Ing4 for proper histone H4 acetylation. Furthermore, activation of the IkappaB alpha promoter by RelA is also Ing4-dependent, and LPS-stimulated, Ing4-null cells have reduced levels of IkappaB alpha promoter H4 acetylation and IkappaB gene expression. Thus, Ing4 negatively regulates the cytokine-mediated inflammatory response in mice by facilitating NF-kappaB activation of IkappaB promoters, thereby suppressing nuclear RelA levels and the activation of select NF-kappaB target cytokines.</p>

	]]>
</description>

<author>Andrew H. Coles et al.</author>


<category>Animals</category>

<category>Cell Cycle Proteins</category>

<category>Cell Nucleus</category>

<category>Crosses, Genetic</category>

<category>Cytokines</category>

<category>Homeodomain Proteins</category>

<category>Inflammation</category>

<category>Lipopolysaccharides</category>

<category>Macrophages</category>

<category>Mice</category>

<category>Mice, Inbred C57BL</category>

<category>Models, Biological</category>

<category>NF-kappa B</category>

<category>*Promoter Regions, Genetic</category>

<category>Signal Transduction</category>

<category>Transcription Factor RelA</category>

<category>Tumor Suppressor Proteins</category>

</item>






<item>
<title>Myogenic microRNA expression requires ATP-dependent chromatin remodeling enzyme function</title>
<link>http://escholarship.umassmed.edu/jones/7</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jones/7</guid>
<pubDate>Fri, 28 Jan 2011 07:36:10 PST</pubDate>
<description>
	<![CDATA[
	<p>Knockdown of the Brg1 ATPase subunit of SWI/SNF chromatin remodeling enzymes in developing zebrafish caused stunted tail formation and altered sarcomeric actin organization, which phenocopies the loss of the microRNA processing enzyme Dicer, or the knockdown of myogenic microRNAs. Furthermore, myogenic microRNA expression and differentiation was blocked in Brg1 conditional myoblasts differentiated ex vivo. The binding of Brg1 upstream of myogenic microRNA sequences correlated with MyoD binding and accessible chromatin structure in satellite cells and myofibers, and it was required for chromatin accessibility and microRNA expression in a tissue culture model for myogenesis. The results implicate ATP-dependent chromatin remodelers in myogenic microRNA gene regulation.</p>

	]]>
</description>

<author>Chandrashekara Mallappa et al.</author>


<category>Adenosine Triphosphate</category>

<category>Animals</category>

<category>Cells, Cultured</category>

<category>Chromatin</category>

<category>*Chromatin Assembly and Disassembly</category>

<category>DNA Helicases</category>

<category>Gene Expression Regulation</category>

<category>Mice</category>

<category>Mice, Inbred C57BL</category>

<category>MicroRNAs</category>

<category>Muscle Development</category>

<category>Myoblasts</category>

<category>Nuclear Proteins</category>

<category>Oligonucleotides, Antisense</category>

<category>Ribonuclease III</category>

<category>Transcription Factors</category>

<category>Zebrafish</category>

<category>Zebrafish Proteins</category>

</item>





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