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<title>Journal of eScience Librarianship</title>
<copyright>Copyright (c) 2013 University of Massachusetts Medical School All rights reserved.</copyright>
<link>http://escholarship.umassmed.edu/jeslib</link>
<description>Recent documents in Journal of eScience Librarianship</description>
<language>en-us</language>
<lastBuildDate>Fri, 17 May 2013 06:01:22 PDT</lastBuildDate>
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<title>When Informationists Get Involved: The CHICA-GIS Project</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/10</link>
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<pubDate>Thu, 02 May 2013 11:01:12 PDT</pubDate>
<description>
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	<p>Child Health Improvement through Computer Automation (CHICA) is a computer decision support system (CDSS) that interfaces with existing electronic medical record systems (EMRS) and delivers "just in time" patient-relevant guidelines to physicians during the clinical encounter and accurately captures structured data from all who interact with the system. “Delivering Geospatial Intelligence to Health Care Professionals (CHICA-GIS)” (1R01LM010923-01) expands the medical application of Geographic Information Systems (GIS) by integrating a geographic information system with CHICA. To provide knowledge management support for CHICA-GIS, three informationists at the Indiana University School of Medicine were awarded a supplement from the National Library Medicine. The informationists will enhance CHICA-GIS by: improving the accuracy and accessibility of information, managing and mapping the knowledge which undergirds the CHICA-GIS decision support tool, supporting community engagement and consumer health information outreach, and facilitating the dissemination of new CHICA-GIS research results and services.</p>

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<author>Elizabeth C. Whipple et al.</author>


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<title>Informationist Support for a Study of the Role of Proteases and Peptides in Cancer Pain</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/9</link>
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<pubDate>Thu, 02 May 2013 11:01:10 PDT</pubDate>
<description>
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	<p>Two supplements were awarded to the New York University Health Sciences Libraries from the National Library of Medicine's informationist grant program. These supplements funded research support in a number of areas, including data management and bioinformatics, two fields that the library had recently begun to explore. As such, the supplements were of particular value to the library as a testing ground for these newer services.</p>
<p>This paper will discuss a supplement received in support of a grant from the National Institute of Dental and Craniofacial Research (PI: Brian Schmidt) on the role of proteases and peptides in cancer pain. A number of barriers were preventing the research team from maximizing the efficiency and effectiveness of their work. A critical component of the research was to identify which proteins, from among hundreds identified in collected samples, to include in preclinical testing. This selection involved laborious and prohibitively time-consuming manual searching of the literature on protein function. Additionally, the research team encompassed ten investigators working in two different cities, which led to issues around the sharing and tracking of both data and citations.</p>
<p>The supplement outlined three areas in which the informationists would assist the researchers in overcoming these barriers: 1) creating an automated literature searching system for protein function discovery, 2) introducing tools and associated workflows for sharing citations, and 3) introducing tools and workflows for sharing data and specimens.</p>

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<author>Alisa Surkis et al.</author>


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<title>NLM Informationist Grant – Web Assisted Tobacco Intervention for Community College Students</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/8</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol2/iss1/8</guid>
<pubDate>Thu, 02 May 2013 11:01:07 PDT</pubDate>
<description>
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	<p>In 2012 the National Library of Medicine awarded several academic medical libraries informationist grants to become embedded with a research team for the purposes of data management. The University of Rochester Medical Center was among those recipients. This article will give background on the research project and team that won the grant, discuss the process of applying for the grant, identify the data management role that the informationist librarians have agreed to work on, how they embedded into the research team, and relay lessons learned thus far in the project.</p>

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<author>Linda Hasman et al.</author>


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<title>Informationist Role: Clinical Data Management in Auditory Research</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/7</link>
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<pubDate>Thu, 02 May 2013 11:01:05 PDT</pubDate>
<description>
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	<p>Informationists at NYU Health Sciences Libraries (NYUHSL) successfully applied for a NLM supplement to a translational research grant obtained by PIs in the NYU School of Medicine Department of Otolaryngology titled, “Clinical Management of Cochlear Implant Patients with Contralateral Hearing Aids”. The grant involves development of evidence-based guidelines for post-implant management of patients with bimodal cochlear implants. The PIs are also seeking to acquire new data sets to merge with grant-generated data. In light of the shifting data requirements, and the potential introduction of additional datasets, informationists will evaluate and restructure the data model and data entry tool. Report queries will be refined for the new data model and options for a query tool appropriate for users unfamiliar with query languages will be assessed and implemented. The services offered through this supplement represent the deepest and most detailed data management support offered by NYUHSL to date. The components of the supplement are being analyzed as a pilot of a broader offering of these data management services.</p>

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<author>Karen L. Hanson et al.</author>


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<title>A Librarian by Any Other Name: The Role of the Informationist on a Clinical Research Team</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/6</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol2/iss1/6</guid>
<pubDate>Thu, 02 May 2013 11:01:03 PDT</pubDate>
<description>
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	<p>In 2012, the Lamar Soutter Library (LSL), University of Massachusetts Medical School, successfully collaborated with two principal investigators at UMMS, as well as their research team, to receive a supplemental grant from the National Library of Medicine. The award, an “NLM Administrative Supplements for Informationist Services in NIH-funded Research Projects”, was one of eight awarded nationally. It provides funding to support an informationist, or in-context information specialist, who serves the research team by offering expertise in the areas of data and information management.</p>
<p>For 18 months, the informationist is serving as a member of the research team on the grant, “Promoting Breast Cancer Screening in Non-Adherent Women” (R01 CA-132935, National Cancer Institute, National Institutes of Health), working to develop data management tools, providing an in-depth literature review and report on the issues facing researchers and internet technology professionals when building and implementing research tools, assisting with a systematic review on the effectiveness of telephone intervention protocols for preventive screenings, and instructing the members of the team in advanced searching techniques and bibliographic management.</p>
<p>This role serves as a new model of embedded librarianship for the LSL. It also provides opportunities for new services from the Library in the role of data and information management. Further, the acceptance of an informationist into a well-funded research team demonstrates a level of commitment by researchers to receiving research support from the Library that it has not experienced to date. This brief paper describes the study and the accomplishments to date.</p>

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<author>Sally A. Gore</author>


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<title>Welch Informationist Collaboration with the Johns Hopkins Medicine Department of Radiology</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/5</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol2/iss1/5</guid>
<pubDate>Thu, 02 May 2013 11:01:01 PDT</pubDate>
<description>
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	<p>With the announcement of the NLM Administrative Supplement Grant, the informationists at the Welch Medical Library found an interested and enthusiastic Principal Investigator (PI) in the Department of Radiology at The Johns Hopkins School of Medicine. Although the PI had not used the services of a Welch informationist before, he was eager to collaborate with an informationist on the grant “Dose-Response in Radionuclide Therapy,” (Parent Grant Number: 5R01CA116477-07) and had self-identified the need for “a literature review by experts” to fulfill his funded work.</p>
<p>Targeted radionuclide therapy is an emerging modality for cancer therapy that involves the delivery of radioactive atoms using carriers that preferentially bind to tumor cells. Such treatment is best implemented with patient-specific dosimetry calculations. This mutually beneficial partnership brings the specialized skill set, knowledge base and expertise of an informationist to the biomedical research team to assist in accomplishing the broader work of improving RPT delivery in metastatic cancer patients.</p>
<p>The informationist will carry out multiple tasks to produce an effective and efficient workflow that facilitates the dissemination of the information to a globally dispersed research team. This collaboration will be evaluated both quantitatively and qualitatively, and the important role of the informationist in the success of this project will demonstrate the value of including an informationist in the research team. This demonstrated value will assist Welch Library in continuing to promote the embedded informationist program to other interested researchers throughout the institution.</p>

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<author>Victoria H. Goode et al.</author>


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<title>The Role of the Library in the Research Enterprise</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/4</link>
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<pubDate>Thu, 02 May 2013 11:01:00 PDT</pubDate>
<description>
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	<p>Libraries have provided services to researchers for many years. Changes in technology and new publishing models provide opportunities for libraries to be more involved in the research enterprise. Within this article, the author reviews traditional library services, briefly describes the eScience and publishing landscape as it relates to libraries, and explores possible library programs in support of research. Many of the new opportunities require new partnerships, both within the institution and externally.</p>

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<author>Christopher J. Shaffer</author>


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<title>Embedded with the Scientists: The UCLA Experience</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/3</link>
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<pubDate>Thu, 02 May 2013 11:00:58 PDT</pubDate>
<description>
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	<p>In this video article, Lisa Federer, Research Informationist at the UCLA Louise M. Darling Biomedical Library, describes her experience as a research informationist for a National Institutes of Health-funded research team at the University of California, Los Angeles.</p>

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<author>Lisa M. Federer</author>


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<title>Informationist Careers for Librarians– A Brief History of NLM’s Involvement</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/2</link>
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<pubDate>Thu, 02 May 2013 11:00:56 PDT</pubDate>
<description>
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	<p>Valerie Florance of the National Library of Medicine (NLM) discusses NLM's support programs to encourage new roles for health sciences librarians, specifically the NLM Administrative Supplements for Informationist Services in NIH-funded Research Projects program.</p>

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<author>Valerie Florance, PhD</author>


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<title>Highlighting the Informationist As a Data Librarian Embedded in a Research Team</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss1/1</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol2/iss1/1</guid>
<pubDate>Thu, 02 May 2013 11:00:54 PDT</pubDate>
<description>
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	<p>JESLIB Editor Elaine R. Martin introduces the papers in Volume 2, Issue 1 (2013), which focuses on the role of and the Informationist or Embedded Librarian in the scientific research process. As biomedical science becomes more data intensive, researchers are faced with a range of data management challenges, problems, and needs. Health sciences librarians are ideal partners for offering scientists at their institutions a range of data management services.</p>

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<author>Elaine R. Martin</author>


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<title>Common Errors in Ecological Data Sharing</title>
<link>http://escholarship.umassmed.edu/jeslib/vol2/iss2/1</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol2/iss2/1</guid>
<pubDate>Tue, 23 Apr 2013 07:35:36 PDT</pubDate>
<description>
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	<p><strong>Objectives:</strong> (1) to identify common errors in data organization and metadata completeness that would preclude a “reader” from being able to interpret and re-use the data for a new purpose; and (2) to develop a set of best practices derived from these common errors that would guide researchers in creating more usable data products that could be readily shared, interpreted, and used.</p>
<p><strong>Methods:</strong> We used directed qualitative content analysis to assess and categorize data and metadata errors identified by peer reviewers of data papers published in the Ecological Society of America’s (ESA) Ecological Archives. Descriptive statistics provided the relative frequency of the errors identified during the peer review process.</p>
<p><strong>Results:</strong> There were seven overarching error categories: Collection & Organization, Assure, Description, Preserve, Discover, Integrate, and Analyze/Visualize. These categories represent errors researchers regularly make at each stage of the Data Life Cycle. Collection & Organization and Description errors were some of the most common errors, both of which occurred in over 90% of the papers.</p>
<p><strong> Conclusions:</strong> Publishing data for sharing and reuse is error prone, and each stage of the Data Life Cycle presents opportunities for mistakes. The most common errors occurred when the researcher did not provide adequate metadata to enable others to interpret and potentially re-use the data. Fortunately, there are ways to minimize these mistakes through carefully recording all details about study context, data collection, QA/ QC, and analytical procedures from the beginning of a research project and then including this descriptive information in the metadata.</p>

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<author>Karina E. Kervin et al.</author>


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<title>Data Management Training for Graduate Students at a Large Research University</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss3/8</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol1/iss3/8</guid>
<pubDate>Wed, 13 Mar 2013 09:15:58 PDT</pubDate>
<description>
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	<p>This article describes UMass Amherst Libraries data management workshops and online resources developed for graduate students. Although students respond favorably to general “Data Management Basics” workshops, they offer suggestions for improvement and request discipline-specific examples, tools, and resources to augment the general information presented. In response, the Libraries’ Data Working Group aims to develop both broad-based, discipline agnostic workshops as well as on-demand, discipline-specific workshops.</p>

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<author>Jessica Adamick et al.</author>


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<title>A Data Sharing Story</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss3/7</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol1/iss3/7</guid>
<pubDate>Wed, 13 Mar 2013 09:15:52 PDT</pubDate>
<description>
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	<p>From the early days of modern science through this century of Big Data, data sharing has enabled some of the greatest advances in science. In the digital age, technology can facilitate more effective and efficient data sharing and preservation practices, and provide incentives for making data easily accessible among researchers. At the Institute for Quantitative Social Science at Harvard University, we have developed an open-source software to share, cite, preserve, discover and analyze data, named the Dataverse Network. We share here the project’s motivation, its growth and successes, and likely evolution.</p>

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<author>Mercè Crosas</author>


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<title>A Case Study: Data Management in Biomedical Engineering</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss3/6</link>
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<pubDate>Wed, 13 Mar 2013 09:15:47 PDT</pubDate>
<description>
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	<p>In a biomedical engineering lab at Worcester Polytechnic Institute, co-author Dr. Glenn R. Gaudette and his research team are investigating the effects of stem cell therapy on the regeneration of function in damaged cardiac tissue in laboratory rats. Each instance of stem cell experimentation on a rat yields hundreds of data sets that must be carefully captured, documented and securely stored so that the data will be easily accessed and retrieved for papers, reports, further research, and validation of findings, while meeting NIH guidelines for data sharing. After a brief introduction to the bioengineering field and stem cell research, this paper focuses on the experimental workflow and the data generated in one instance of stem cell experimentation; the lab’s data management practices; and how Dr. Gaudette teaches data management to the lab’s incoming graduate students each semester. The co-authors discuss the haphazard manner by which engineering and science students typically learn data management practices, and advocate for the integration of formal data management instruction in higher education STEM curricula.  The paper concludes with a discussion of the Frameworks for a Data Management Curriculum developed collaboratively by the co-authors’ institutions -- the University of Massachusetts Medical School and Worcester Polytechnic Institute -- to teach data management best practices to students in the sciences, health sciences, and engineering.</p>

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<author>Glenn R. Gaudette et al.</author>


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<title>Lurking in the Lab:  Analysis of Data from Molecular Biology Laboratory Instruments</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss3/5</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol1/iss3/5</guid>
<pubDate>Wed, 13 Mar 2013 09:15:41 PDT</pubDate>
<description>
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	<p>OBJECTIVE: This project examined primary research data files found on instruments in a molecular biology teaching laboratory. Experimental data files were analyzed in order to learn more about the types of data generated by these instruments (e.g. file formats), and to evaluate current laboratory data management practices.</p>
<p>SETTING: This project examined experimental data files from instruments in a teaching laboratory at Brandeis University.</p>
<p>METHODOLOGY: Experimental data files and associated metadata on instrument hard drives were captured and analyzed using Xplorer2 software. Formats were categorized as proprietary or open, and characteristics such as file naming conventions were noted. Discussions with the faculty member and lab staff guided the project scope and informed the findings.</p>
<p>RESULTS: Files in both proprietary and open formats were found on the instrument hard drives. 62% of the experimental data files were in proprietary formats. Image files in various formats accounted for the most prevalent types of data found. Instrument users varied widely in their approaches to data management tasks such as file naming conventions.</p>
<p>CONCLUSIONS: This study found inconsistent approaches to managing data on laboratory instruments. Prevalence of proprietary file formats is a concern with this type of data. Students express frustration in working with these data, and files in these proprietary formats could pose curation and preservation challenges in the future. Teaching labs afford an opportunity for librarians interested in learning more about primary research data and data management practices.</p>

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<author>Jen Ferguson</author>


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<title>Proprietary vs. General Data Formats: Opportunity for Librarians</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss3/4</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol1/iss3/4</guid>
<pubDate>Wed, 13 Mar 2013 09:15:33 PDT</pubDate>
<description>
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	<p>A commentary on concerns raised in Jen Ferguson's article in this issue, "Lurking in the Lab: Analysis of Data from Molecular Biology Laboratory Instruments."</p>

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<author>James Schroeder</author>


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<title>What Do Data Services Librarians Do?</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss3/3</link>
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<pubDate>Wed, 13 Mar 2013 09:15:30 PDT</pubDate>
<description>
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	<p>JESLIB Editor Elaine R. Martin introduces the articles in Volume 1, Issue 3 and discusses how these papers demonstrate many of the data services librarians can offer to the research community.</p>

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<author>Elaine R. Martin</author>


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<title>Forging New Service Paths: Institutional Approaches to Providing Research Data  Management Services</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss3/2</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol1/iss3/2</guid>
<pubDate>Wed, 02 Jan 2013 11:30:29 PST</pubDate>
<description>
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	<p>Objective: This paper describes three different institutional experiences in developing research data management programs and services, challenges/opportunities and lessons learned.</p>
<p>Overview: This paper is based on the Librarian Panel Discussion during the 4th Annual University of Massachusetts and New England Region e-Science Symposium. Librarians representing large public and private research universities presented an overview of service models developed at their respective organizations to bring support for data management and eScience to their communities. The approaches described include two library-based, integrated service models and one collaboratively-staffed, center-based service model.</p>
<p>Results: Three institutions describe their experiences in creating the organizational capacity for research data management support services. Although each institutional approach is unique, common challenges include garnering administrative support, managing the integration of services with new or existing staff structures, and continuing to meet researchers needs as they evolve.</p>
<p>Conclusions: There is no one way to provide research data management services, but any staff position, committee, or formalized center reflects an overarching organizational commitment to data management support.</p>

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<author>Regina Raboin et al.</author>


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<title>Mentoring for Emerging Careers in eScience Librarianship: An iSchool – Academic Library Partnership</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss3/1</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol1/iss3/1</guid>
<pubDate>Fri, 30 Nov 2012 11:30:29 PST</pubDate>
<description>
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	<p>Objective: Cornell University Library and the School of Information Studies at Syracuse University established a partnership to offer a mentorship program to students enrolled in the eScience Librarianship program at Syracuse. We assessed the success of the program in meeting intended program outcomes.</p>
<p>Design and Setting: Each of eight students was matched with a Cornell Librarian mentor. Other components of the program included program-specific activities and events, virtual communication, and an open invitation to students to participate in Cornell University Library events.</p>
<p>Methods: We conducted an exit survey of both students and mentors at the conclusion of the program. The survey was administered online, with seven of eight students and all mentors completing the survey.</p>
<p>Results and Conclusions: The program was successful in attaining professional acculturation outcomes and professional development outcomes. Results for employment outcomes were mixed (though it was too early to expect most students to have successfully obtained a job), and also mixed for outcomes related to opportunities such as internships and projects. We offer some suggestions for improvement in these areas. Overall, students and mentors had a very positive experience with the program.</p>

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<author>Gail Steinhart et al.</author>


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<title>A Collaborative Framework for Data Management Services: The Experience of the University of California</title>
<link>http://escholarship.umassmed.edu/jeslib/vol1/iss2/7</link>
<guid isPermaLink="true">http://escholarship.umassmed.edu/jeslib/vol1/iss2/7</guid>
<pubDate>Wed, 03 Oct 2012 06:25:24 PDT</pubDate>
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	<p>The National Science Foundation and other funding agencies now require researchers to include data management plans with new grant proposals. Faced with this requirement, researchers are looking to libraries for help with various aspects of research data management and curation, from creating data management plans to archiving and providing access to their research data. The University of California Libraries deliver a growing range of services and tools such as the<a href="https://dmp.cdlib.org/"> DMPTool</a>,<a href="http://n2t.net/ezid/"> EZID</a>,<a href="http://merritt.cdlib.org/"> Merritt</a>, <a href="http://webarchives.cdlib.org/">Web Archiving Service</a> and campus-based data management programs. This article discusses these initiatives, tools, and methods for campus engagement and faculty outreach, plus opportunities and challenges in developing library data services.</p>

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<author>Joan Starr et al.</author>


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