Since the school's inception in 1979, students in the Graduate School of Biomedical Sciences (GSBS) have contributed more than 1000 research articles to the field of biomedical sciences. The GSBS Student Publications collection makes this body of work accessible to our students, faculty, potential recruits, and the citizens of Massachusetts. To view this collection broken out by academic program, visit GSBS Student Publications by Academic Program.

Attention GSBS students: Click on Submit Research in the left sidebar to submit your publications. You’ll need to log in or create a free account. If you have the article's PubMed ID, submission is very easy. Enter the PubMed ID and information from PubMed will be used to populate the submission form. Questions? Contact Lisa Palmer.

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Publications from 2012

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An evaluation of the diagnostic accuracy of the 1991 American College of Chest Physicians/Society of Critical Care Medicine and the 2001 Society of Critical Care Medicine/European Society of Intensive Care Medicine/American College of Chest Physicians/American Thoracic Society/Surgical Infection Society sepsis definition, Huifang Zhao, Stephen O. Heard, Marie T. Mullen, Sybil L. Crawford, Robert J. Goldberg, Gyorgy Frendl, and Craig M. Lilly

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Distinct molecular pathways mediate glial activation and engulfment of axonal debris after axotomy, Jennifer S. Ziegenfuss, Johnna E. Doherty, and Marc R. Freeman

Publications from 2011

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Factors associated with Medicaid patients' access to buprenorphine treatment, Jeffrey D. Baxter, Robin E. Clark, Mihail D. Samnaliev, Yat (Gary) Leung, and Lobat Hashemi

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Vitamin D intake from foods and supplements and depressive symptoms in a diverse Population of Older Women., Elizabeth Bertone-Johnson, Sally I. Powers, Leslie Spangler, Robert L. Brunner, Yvonne L. Michael, Joseph C. Larson, Amy E. Millen, Maria N. Bueche, Elena Salmoirago Blotcher, Simin Liu, Sylvia Wassertheil-Smoller, Judith K. Ockene, Ira S. Ockene, and JoAnn E. Manson

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Cyclin-specific docking motifs promote phosphorylation of yeast signaling proteins by G1/S Cdk complexes., Samyabrata Bhaduri and Peter M. Pryciak

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Argonaute protein identity and pairing geometry determine cooperativity in mammalian RNA silencing, Jennifer A. Broderick, William E. Salomon, Sean P. Ryder, Neil Aronin, and Phillip D. Zamore

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MicroRNA therapeutics, Jennifer A. Broderick and Phillip D. Zamore

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Remembering nutrient quality of sugar in Drosophila, Christopher J. Burke and Scott Waddell

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Mindfulness training for coping with hot flashes: results of a randomized trial, James Carmody, Sybil L. Crawford, Elena Salmoirago Blotcher, Katherine Leung, Linda C. Churchill, and NIcholas Olendzki

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Phosphate and R2D2 Restrict the Substrate Specificity of Dicer-2, an ATP-Driven Ribonuclease, Elif Sarinay Cenik, Ryuya Fukunaga, Gang Lu, Robert Dutcher, Yeming Wang, Traci M. Tanaka Hall, and Phillip D. Zamore

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Argonaute proteins, Elif Sarinay Cenik and Phillip D. Zamore

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Use of instrumental variable in prescription drug research with observational data: a systematic review, Yong Chen and Becky A. Briesacher

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A modified bacterial one-hybrid system yields improved quantitative models of transcription factor specificity, Ryan G. Christensen, Ankit Gupta, Zheng Zuo, Lawrence A. Schriefer, Scot A. Wolfe, and Gary D. Stormo

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White matter neuron alterations in schizophrenia and related disorders, Caroline M. Connor, Benjamin C. Crawford, and Schahram Akbarian

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On Characterizing Adaptive Events Unique to Modern Humans, Jessica L. Crisci, Alex Wong, Jeffrey M. Good, and Jeffrey D. Jensen

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The cilia protein IFT88 is required for spindle orientation in mitosis, Benedicte Delaval, Alison Bright, Nathan D. Lawson, and Stephen J. Doxsey

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An E2F1-mediated DNA damage response contributes to the replication of human cytomegalovirus, Xiaofei E., Mary Theresa Pickering, Michelle E. Debatis, Jonathan Patrick Castillo, Alexander Lagadinos, Shixia Wang, Shan Lu, and Timothy F. Kowalik

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Chemically modified cellulose fibrous meshes for use as tissue engineering scaffolds, Tera M. Filion, Artem Kutikov, and Jie Song

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Scalable Functional Bone Substitutes: Strategic Integration of Key Structural Elements of Bone in Synthetic Biomaterials, Tera M. Filion and Jie Song

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Similarity of mouse perivascular and brown adipose tissues and their resistance to diet-induced inflammation, Timothy P. Fitzgibbons, Sophia Kogan, Myriam Aouadi, Gregory M. Hendricks, Juerg R. Straubhaar, and Michael P. Czech

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Human cryptochrome exhibits light-dependent magnetosensitivity, Lauren E. Foley, Robert J. Gegear, and Steven M. Reppert

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High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism, Jennifer E. Griffin, Jeffrey D. Gawronski, Michael A. Dejesus, Thomas R. Ioerger, Brian J. Akerley, and Christopher M. Sassetti

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Zinc finger protein-dependent and -independent contributions to the in vivo off-target activity of zinc finger nucleases, Ankit Gupta, Xiangdong Meng, Lihua Julie Zhu, Nathan D. Lawson, and Scot A. Wolfe

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Crosstalk between NDR kinase pathways coordinates cell cycle dependent actin rearrangements, Sneha Gupta and Dannel McCollum

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Experimental illumination of a fitness landscape, Ryan T. Hietpas, Jeffrey D. Jensen, and Daniel N. A. Bolon

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Culturally appropriate storytelling to improve blood pressure: a randomized trial, Thomas K. Houston, Jeroan J. Allison, Marc Sussman, Wendy Horn, Cheryl L. Holt, John Trobaugh, Maribel Salas, Maria Pisu, Yendelela L. Cuffee, Damien Larkin, Sharina D. Person, Bruce A. Barton, Catarina I. Kiefe, and Sandral Hullett

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Cost-effectiveness Analysis of Chlamydia trachomatis Screening Via Internet-based Self-collected Swabs Compared With Clinic-based Sample Collection, Wei Huang, Charlotte A. Gaydos, Mathilda R. Barnes, Mary Jett-Goheen, and Diane R. Blake

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Bioluminescence-based high-throughput screen identifies pharmacological agents that target neurotransmitter signaling in small cell lung carcinoma, Ma. Reina D. Improgo, Christopher W. Johnson, Andrew R. Tapper, and Paul D. Gardner

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Nicotinic acetylcholine receptor-mediated mechanisms in lung cancer, Ma. Reina D. Improgo, Andrew R. Tapper, and Paul D. Gardner

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Setdb1-mediated histone H3K9 hypermethylation in neurons worsens the neurological phenotype of Mecp2-deficient mice, Yan Jiang, Anouch Matevossian, Yin Guo, and Schahram Akbarian

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FBF represses the Cip/Kip cell-cycle inhibitor CKI-2 to promote self-renewal of germline stem cells in C. elegans, Irene Kalchhauser, Brian M. Farley, Sandra Pauli, Sean P. Ryder, and Rafal Ciosk

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Structural insights into early folding events using continuous-flow time-resolved SAXS, Sagar V. Kathuria, Liang Guo, Rita Graceffa, Raul Barrea, R. Paul Nobrega, C. Robert Matthews, Tom Irving, and Osman Bilsel

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Genotypic and functional properties of early infant HIV-1 envelopes, Michael G. Kishko, Mohan Somasundaran, Frank E. Brewster, John L. Sullivan, Paul R. Clapham, and Katherine Luzuriaga

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Regulation of senescence in cancer and aging, Yahui Kong, Hang Cui, Charusheila Ramkumar, and Hong Zhang

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Autoregulatory and paracrine control of synaptic and behavioral plasticity by octopaminergic signaling, Alex C. Koon, James A. Ashley, Romina Barria, Shamik DasGupta, Ruth Brain, Scott Waddell, Mark J. Alkema, and Vivian Budnik

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Drosophila appetitive olfactory conditioning, Michael Jonathan Krashes and Scott Waddell

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Drosophila aversive olfactory conditioning, Michael Jonathan Krashes and Scott Waddell

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The transcription factor PlagL2 activates Mpl transcription and signaling in hematopoietic progenitor and leukemia cells, Sean F. Landrette, Dmitri Madera, Feng He, and Lucio H. Castilla

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Behavioral Health Disorders and Adherence to Measures of Diabetes Care Quality, Yat (Gary) Hung Leung, Jianying Zhang, Wen-Chieh Lin, and Robin E. Clark

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Behavioral Disorders and Diabetes-Related Outcomes Among Massachusetts Medicare and Medicaid Beneficiaries, Yat (Gary) Leung, Jianying Zhang, Wen-Chieh Lin, and Robin E. Clark

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Uncovering intrinsic connectional architecture of functional networks in awake rat brain, Zhifeng Liang, Jean A. King, and Nanyin Zhang

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Hospital Mortality, Length of Stay, and Preventable Complications Among Critically Ill Patients Before and After Tele-ICU Reengineering of Critical Care Processes, Craig M. Lilly, Shawn Cody, Huifang Zhao, Karen Landry, Stephen P. Baker, John McIlwaine, M. Willis Chandler, Richard S. Irwin, Stephen O. Heard, J. Matthias Walz, and Khaldoun Faris

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Twelve-month Diagnosed Prevalence of Behavioral Health Disorders among Elderly Medicare and Medicaid Members, Wen-Chieh Lin, Jianying Zhang, Yat (Gary) Hung Leung, and Robin E. Clark

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The combination of early and rapid type I IFN, IL-1alpha, and IL-1beta production are essential mediators of RNA-like adjuvant driven CD4+ Th1 responses, Rachel F. Madera, Jennifer P. Wang, and Daniel H. Libraty

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Acquired long QT syndrome from stress cardiomyopathy is associated with ventricular arrhythmias and torsades de pointes, Christopher Madias, Timothy P. Fitzgibbons, Alawi A. Alsheikh-Ali, Joseph L. Bouchard, Benjamin Kalsmith, Ann C. Garlitski, Dennis A. Tighe, N. A. Mark Estes III, Gerard P. Aurigemma, and Mark S. Link

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The C. elegans Touch Response Facilitates Escape From Predacious Fungi, Sean M. Maguire, Christopher M. Clark, Jennifer K. Pirri, John J. Nunnari, and Mark J. Alkema

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A conserved determinant in the V1 loop of HIV-1 modulates the V3 loop to prime low CD4 use and macrophage infection, Thomas A. Musich, Paul J. Peters, Maria J. Duenas-Decamp, Maria Paz Gonzalez-Perez, James E. Robinson, Susan Zolla-Pazner, Jonathan K. Ball, Katherine Luzuriaga, and Paul R. Clapham

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A natural loss-of-function mutation of MyD88 disrupts its ability to form Myddosomes, Kamalpreet Nagpal, Theo S. Plantinga, Cherilyn M. Sirois, Brian G. Monks, Eicke Latz, Mihai G. Netea, and Douglas T. Golenbock

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PDP-1 Links the TGF-β and IIS Pathways to Regulate Longevity, Development, and Metabolism, Sri Devi Narasimhan, Kelvin Yen, Ankita Bansal, Eun-Soo Kwon, Srivatsan Padmanabhan, and Heidi A. Tissenbaum

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The Plasma Membrane-Associated GTPase Rin Interacts with the Dopamine Transporter and Is Required for Protein Kinase C-Regulated Dopamine Transporter Trafficking, Deanna M. Navaroli, Zachary H. Stevens, Zeljko Uzelac, Luke Gabriel, Michael J. King, Lawrence M. Lifshitz, Harald H. Sitte, and Haley E. Melikian

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Long-term Trends in Short-term Outcomes in Acute Myocardial Infarction, Hoa L. Nguyen, Jane S. Saczynski, Joel M. Gore, Molly E. Waring, Darleen M. Lessard, Jorge L. Yarzebski, George W. Reed, Frederick A. Spencer, Shu-Xia Li, and Robert J. Goldberg

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Xenopus laevis oocytes infected with multi-drug-resistant bacteria: implications for electrical recordings, Denice O'Connell, Karen Mruk, Jessica M. Rocheleau, and William R. Kobertz

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Dynamics of preferential substrate recognition in HIV-1 protease: redefining the substrate envelope, Aysegul Ozen, Turkan Haliloglu, and Celia A. Schiffer

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Conformational lability in the class II MHC 3-10 helix and adjacent extended strand dictate HLA-DM susceptibility and peptide exchange, Corrie A. Painter, Maria P. Negroni, Kathy A. Kellersberger, Zarixia Zavala-Ruiz, James E. Evans, and Lawrence J. Stern

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A Pair of Inhibitory Neurons Are Required to Sustain Labile Memory in the Drosophila Mushroom Body, Jena L. Pitman, Wolf Huetteroth, Christopher J. Burke, Michael Jonathan Krashes, Sen-Lin Lai, Tzumin Lee, and Scott Waddell

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Identification of Influenza Cases During the H1N1 Pandemic in Massachusetts Using Population-Based Hospital Discharge Data, Hilary Placzek and Lawrence C. Madoff

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Yeast one-hybrid assays for gene-centered human gene regulatory network mapping, John S. Reece-Hoyes, A. Rasim Barutcu, Rachel Patton McCord, Jun Seop Jeong, Lizhi Jiang, Andrew Macwilliams, Xinping Yang, Kourosh Salehi-Ashtiani, David E. Hill, Seth Blackshaw, Heng Zhu, Job Dekker, and Albertha J. M. Walhout

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A novel zinc binding system, ZevAB, is critical for survival of nontypeable Haemophilus influenzae in a murine lung infection model, Charles V. Rosadini, Jeffrey D. Gawronski, Daniel Raimunda, José M Argüello, and Brian J. Akerley

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Characteristics of Dispositional Mindfulness in Patients With Severe Cardiac Disease, Elena Salmoirago Blotcher, Sybil L. Crawford, James Carmody, Lawrence S. Rosenthal, and Ira S. Ockene

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Constipation and Risk of Cardiovascular Disease among Postmenopausal Women, Elena Salmoirago Blotcher, Sybil L. Crawford, Elizabeth A. Jackson, Judith K. Ockene, and Ira S. Ockene

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Religion and Healthy Lifestyle Behaviors Among Postmenopausal Women: the Women's Health Initiative, Elena Salmoirago Blotcher, George Fitchett, Judith K. Ockene, Eliezer Schnall, Sybil L. Crawford, Iris Granek, JoAnne Manson, Ira S. Ockene, Mary Jo O'Sullivan, Linda Powell, and Stephen Rapp

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The PYHIN protein family as mediators of host defenses, Stefan A. Schattgen and Katherine A. Fitzgerald

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MicroRNA Expression Data Reveals a Signature of Kidney Damage following Ischemia Reperfusion Injury, Michael D. Shapiro, Jessamyn Bagley, Jeff Latz, Jonathan G. Godwin, Xupeng Ge, Stefan G. Tullius, and John Iacomini

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On detecting selective sweeps using single genomes, Priyanka Sinha, Aslihan Dincer, Daniel Virgil, Guang Xu, Yu-Ping Poh, and Jeffrey D. Jensen

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Functional ramifications for the loss of P-selectin expression on hematopoietic and leukemic stem cells, Con Sullivan, Yaoyu Chen, Yi Shan, Yiguo Hu, Cong Peng, Haojian Zhang, Linghong Kong, and Shaoguang Li

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Chromosome-Biased Binding and Gene Regulation by the Caenorhabditis elegans DRM Complex, Tomoko M. Tabuchi, Bart Deplancke, Naoki Osato, Lihua Julie Zhu, Inmaculada M. Barrasa, Melissa M. Harrison, Robert H. Horvitz, Albertha J. M. Walhout, and Kirsten A. Hagstrom

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Glucan particles for selective delivery of siRNA to phagocytic cells in mice, Gregory J. Tesz, Myriam Aouadi, Matthieu Prot, Sarah M. Nicoloro, Emilie Boutet, Shinya U. Amano, Anca Goller, Mengxi Wang, Chang-An Guo, William E. Salomon, Joseph V. Virbasius, Rebecca A. Baum, Mark J. O'Connor, Ernesto Soto, Gary R. Ostroff, and Michael P. Czech

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Quality measurement of medication monitoring in the "meaningful use" era, Jennifer Tjia, Terry S. Field, Shira H. Fischer, Shawn J. Gagne, Daniel J. Peterson, Lawrence D. Garber, and Jerry H. Gurwitz

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Baseline and Follow-up Laboratory Monitoring of Cardiovascular Medications, Jennifer Tjia, Shira H. Fischer, Marsha A. Raebel, Daniel J. Peterson, Yanfang Zhao, Shawn J. Gagne, Jerry H. Gurwitz, and Terry S. Field

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Translocation channel gating kinetics balances protein translocation efficiency with signal sequence recognition fidelity, Steven F. Trueman, Elisabet C. Mandon, and Reid Gilmore

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The relationship between duration of initial alcohol exposure and persistence of molecular tolerance is markedly nonlinear, Cristina M. Velazquez-Marrero, Patricia M. Wynne, Alexandra Bernardo, Stephanie Palacio, Gilles E. Martin, and Steven N. Treistman

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Methoxetamine: a novel ketamine analog and growing health-care concern, Jeanine Ward, Sean Hyun Rhyee, Jason Plansky, and Edward W. Boyer

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Herbal medicines for the management of opioid addiction: safe and effective alternatives to conventional pharmacotherapy, Jeanine Ward, Christopher D. Rosenbaum, Christina Hernon, Christopher R. McCurdy, and Edward W. Boyer

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Amphetamine use in Rhode Island Hospital trauma patients, Jeanine Ward, Matthew Zuckerman, Charles A. Adams, and Anthony Napoli

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The role of cellular factors in promoting HIV budding, Eric R. Weiss and Heinrich G. Gottlinger

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A quantitative RNA code for mRNA target selection by the germline fate determinant GLD-1, Jane E. Wright, Dimos Gaidatzis, Mathias Senften, Brian M. Farley, Eric Westhof, Sean P. Ryder, and Rafal Ciosk

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Disrupting the circadian clock: Gene-specific effects on aging, cancer, and other phenotypes, Elizabeth A. Yu and David R. Weaver

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Quaking regulates Hnrnpa1 expression through its 3' UTR in oligodendrocyte precursor cells, Nancy R. Zearfoss, Carina C. Clingman, Brian M. Farley, Lisa M. McCoig, and Sean P. Ryder

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Heterotypic piRNA Ping-Pong requires qin, a protein with both E3 ligase and Tudor domains, Zhao Zhang, Jia Xu, Birgit S. Koppetsch, Jie Wang, Cindy Tipping, Shengmei Ma, Zhiping Weng, William E. Theurkauf, and Phillip D. Zamore

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Nicotine-mediated activation of dopaminergic neurons in distinct regions of the ventral tegmental area, Rubing Zhao-Shea, Liwang Liu, Lindsey G. Soll, Ma. Reina D. Improgo, Erin E. Meyers, J. Michael McIntosh, Sharon R. Grady, Michael J. Marks, Paul D. Gardner, and Andrew R. Tapper

Publications from 2010

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Molecular Basis for Drug Resistance in HIV-1 Protease, Akbar Ali, Rajintha M. Bandaranayake, Yufeng Cai, Nancy M. King, Madhavi Kolli, Seema Mittal, Jennifer E. Foulkes-Murzycki, Madhavi N. L. Nalam, Ellen A. Nalivaika, Aysegul Ozen, Moses Prabu-Jeyabalan, Kelly Thayer, and Celia A. Schiffer

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Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network., H. Efsun Arda, Stefan Taubert, Lesley T. MacNeil, Colin C. Conine, Ben Tsuda, Marc Van Gilst, Reynaldo Sequerra, Lynn Doucette-Stamm, Keith R. Yamamoto, and Albertha J. M. Walhout

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Gene-centered regulatory networks, H. Efsun Arda and Albertha J. M. Walhout

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A dominant mutation in a neuronal acetylcholine receptor subunit leads to motor neuron degeneration in Caenorhabditis elegans, Belinda Barbagallo, Hilary A. Prescott, Patrick Boyle, Jason Climer, and Michael M. Francis

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Alterations in urine, serum and brain metabolomic profiles exhibit sexual dimorphism during malaria disease progression, Angika Basant, Mayuri Rege, Shobhona Sharma, and Haripalsingh M. Sonawat

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A modified rheumatoid arthritis disease activity score without acute-phase reactants (mDAS28) for epidemiological research, Mary Jane Bentley, Jeffrey D. Greenberg, and George W. Reed

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Venous thromboembolism risk and prophylaxis in hospitalised medically ill patients. The ENDORSE Global Survey., Jean-Francois Bergmann, Alexander T. Cohen, Victor F. Tapson, Samuel Z. Goldhaber, Ajay K. Kakkar, Bruno Deslandes, Wei Huang, Frederick A. Anderson, and ENDORSE Investigators

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Injection treatment and back pain associated with degenerative lumbar spinal stenosis in older adults, Virginia G. Briggs, Wenjun Li, Mark S. Kaplan, Mark S. Eskander, and Patricia D. Franklin

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Temporally- and spatially-regulated transcriptional activity of the nicotinic acetylcholine receptor beta4 subunit gene promoter., Lei Bruschweiler-Li, Yuly F. Fuentes Medel, Michael D. Scofield, Ellen B. T. Trang, Sarah A. Binke, and Paul D. Gardner

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Unexplained variation across US nursing homes in antipsychotic prescribing rates., Yong Chen, Becky A. Briesacher, Terry S. Field, Jennifer Tjia, Denys T. Lau, and Jerry H. Gurwitz

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Developmental regulation and individual differences of neuronal H3K4me3 epigenomes in the prefrontal cortex, Iris Cheung, Hennady P. Shulha, Yan Jiang, Anouch Matevossian, Jie Wang, Zhiping Weng, and Schahram Akbarian

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Broad cross-reactive TCR repertoires recognizing dissimilar Epstein-Barr and influenza A virus epitopes, Shalyn Catherine Clute, Yuri N. Naumov, Levi B. Watkin, Nuray Aslan, John L. Sullivan, David A. Thorley-Lawson, Katherine Luzuriaga, Raymond M. Welsh, Roberto Puzone, Franco Celada, and Liisa K. Selin

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Argonautes ALG-3 and ALG-4 are required for spermatogenesis-specific 26G-RNAs and thermotolerant sperm in Caenorhabditis elegans., Colin C. Conine, Pedro J. Batista, Weifeng Gu, Julie M. Claycomb, Daniel A. Chaves, Masaki Shirayama, and Craig C. Mello

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A simple method for improving the specificity of anti-methyl histone antibodies, Caroline M. Connor, Iris Cheung, Andrew Simon, Mira Jakovcevski, Zhiping Weng, and Schahram Akbarian

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CD8 T cell cross-reactivity networks mediate heterologous immunity in human EBV and murine vaccinia virus infections, Markus Cornberg, Shalyn Catherine Clute, Levi B. Watkin, Frances M. Saccoccio, Sung-Kwon Kim, Yuri N. Naumov, Michael A. Brehm, Nuray Aslan, Raymond M. Welsh, and Liisa K. Selin

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miR-21 and miR-31 Converge on TIAM1 to Regulate Migration and Invasion of Colon Carcinoma Cells, Charisa L. Cottonham, Satoshi Kaneko, and Lan Xu

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Acute Modulation of Sugar Transport in Brain Capillary Endothelial Cell Cultures during Activation of the Metabolic Stress Pathway, Anthony J. Cura and Anthony Carruthers

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Specificity and membrane partitioning of Grsp1 signaling complexes with Grp1 family Arf exchange factors, Jonathan P. DiNitto, Meng-Tse Lee, Andrew W. Malaby, and David G. Lambright

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NLRP3 inflammasomes are required for atherogenesis and activated by cholesterol crystals, Peter Duewell, Hajime Kono, Katey J. Rayner, Cherilyn M. Sirois, Gregory Vladimer, Franz G. Bauernfeind, George S. Abela, Luigi Franchi, Gabriel Nuñez, Max Schnurr, Terje Espevik, Egil Lien, Katherine A. Fitzgerald, Kenneth L. Rock, Kathryn J. Moore, Samuel D. Wright, Veit Hornung, and Eicke Latz

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Casein kinase 1 delta (CK1delta) regulates period length of the mouse suprachiasmatic circadian clock in vitro, Jean-Pierre Etchegaray, Elizabeth A. Yu, Premananda Indic, Robert Dallmann, and David R. Weaver