GSBS Student Publications

Title

Experimental illumination of a fitness landscape

Student Author(s)

Ryan T. Hietpas

GSBS Program

Biochemistry & Molecular Pharmacology

UMMS Affiliation

Department of Biochemistry and Molecular Pharmacology; Program in Bioinformatics and Integrative Biology

Date

5-10-2011

Document Type

Article

Medical Subject Headings

Amino Acid Substitution; Codon; Computer Simulation; DNA, Fungal; Evolution, Molecular; Genes, Fungal; HSP90 Heat-Shock Proteins; Models, Genetic; Models, Molecular; Phylogeny; Point Mutation; Saccharomyces cerevisiae; Saccharomyces cerevisiae Proteins; Selection, Genetic

Disciplines

Evolution | Molecular Biology | Molecular Genetics

Abstract

The genes of all organisms have been shaped by selective pressures. The relationship between gene sequence and fitness has tremendous implications for understanding both evolutionary processes and functional constraints on the encoded proteins. Here, we have exploited deep sequencing technology to experimentally determine the fitness of all possible individual point mutants under controlled conditions for a nine-amino acid region of Hsp90. Over the past five decades, limited glimpses into the relationship between gene sequence and function have sparked a long debate regarding the distribution, relative proportion, and evolutionary significance of deleterious, neutral, and advantageous mutations. Our systematic experimental measurement of fitness effects of Hsp90 mutants in yeast, evaluated in the light of existing population genetic theory, are remarkably consistent with a nearly neutral model of molecular evolution.

Comments

Citation: Proc Natl Acad Sci U S A. 2011 May 10;108(19):7896-901. doi: 10.1073/pnas.1016024108. Link to article on publisher's site

Related Resources

Link to article in PubMed

Journal Title

Proceedings of the National Academy of Sciences of the United States of America

PubMed ID

21464309