The Program in Biochemistry & Molecular Pharmacology is an academic program of the Graduate School of Biomedical Sciences (GSBS) at the University of Massachusetts Medical School. The program offers graduate study and research focused in the areas of molecular, cellular and regulatory biochemistry; molecular biophysics; chemical biology; and structural biology. This collection showcases publications and presentations authored by students in this program.

Attention GSBS Biochemistry & Molecular Pharmacology students: To submit your publications, go to GSBS Student Publications and click on Submit Research in the left sidebar. You’ll need to log in or create a free account. If you have the article's PubMed ID, submission is very easy. Enter the PubMed ID and information from PubMed will be used to populate the submission form. Questions? Contact Lisa Palmer.

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Publications from 2002

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Integrated channel plasticity contributes to alcohol tolerance in neurohypophysial terminals, Thomas K. Knott, Alejandro M. Dopico, Govindan Dayanithi, Jose R. Lemos, and Steven N. Treistman

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Novel functional interactions between Trk kinase and p75 neurotrophin receptor in neuroblastoma cells, Mahesh B. Lachyankar, Peter J. Condon, Marie-Claire Daou, Asit K. De, John B. Levine, Axel Obermeier, and Alonzo H. Ross

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Meis family proteins are required for hindbrain development in the zebrafish, Choe Seong-Kyu, Nikolaos Vlachakis, and Charles G. Sagerstrom

Publications from 2001

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The Snail protein family regulates neuroblast expression of inscuteable and string, genes involved in asymmetry and cell division in Drosophila, Shovon Imtiaz Ashraf and Y. Tony Ip

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Differential regulation of the two principal Runx2/Cbfa1 n-terminal isoforms in response to bone morphogenetic protein-2 during development of the osteoblast phenotype, Chaitali Banerjee, Amjad Javed, Je-Yong Choi, Jack Green, Vicki Rosen, Andre J. Van Wijnen, Janet L. Stein, Jane B. Lian, and Gary S. Stein

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Absence of Dbp2p alters both nonsense-mediated mRNA decay and rRNA processing, Andrew T. Bond, David A. Mangus, Feng He, and Allan Jacobson

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Nicotinamide adenine dinucleotide (NAD) and its metabolites inhibit T lymphocyte proliferation: role of cell surface NAD glycohydrolase and pyrophosphatase activities, Rita Bortell, Joel Moss, Robert C. McKenna, Mark R. Rigby, Dena Niedzwiecki, Linda A. Stevens, Walter A. Patton, John P. Mordes, Dale L. Greiner, and Aldo A. Rossini

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Levels of Art2+ cells but not soluble Art2 protein correlate with expression of autoimmune diabetes in the BB rat, Rita Bortell, Debra J. Waite, Barbara J. Whalen, Derrick James Todd, Jean H. Leif, Elena Lesma, Joel Moss, John P. Mordes, Aldo A. Rossini, and Dale L. Greiner

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Cell-cycle arrest in TrkA-expressing NIH3T3 cells involves nitric oxide synthase, Dylan A. Bulseco, Wojciech Poluha, Christopher M. Schonhoff, Marie-Claire Daou, Peter J. Condon, and Alonzo H. Ross

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xid mice reveal the interplay of homeostasis and Bruton's tyrosine kinase-mediated selection at multiple stages of B cell development, Michael P. Cancro, Alex P. Sah, Sherri L. Levy, David M. Allman, Madelyn R. Schmidt, and Robert T. Woodland

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Injection molding of chondrocyte/alginate constructs in the shape of facial implants, Sophia C. N. Chang, Jon A. Rowley, Geoffrey Tobias, Nicholas G. Genes, Amit K. Roy, David J. Mooney, Charles A. Vacanti, and Lawrence J. Bonassar

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Memory CD8+ T cells in heterologous antiviral immunity and immunopathology in the lung, Hong D. Chen, Armando E. Fraire, Isabelle Joris, Michael A. Brehm, Raymond M. Welsh, and Liisa K. Selin

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HIV-1 Tat protein interacts with mammalian capping enzyme and stimulates capping of TAR RNA, Ya-Lin Chiu, Elizabeth Coronel, C. Kiong Ho, Stewart Shuman, and Tariq M. Rana

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Multivalent endosome targeting by homodimeric EEA1, John J. Dumas, Eric Lee Merithew, Eathiraj Sudharshan, Deepa Rajamani, Susan J. Hayes, Deirdre C. Lawe, Silvia Corvera, and David G. Lambright

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Expression of the osteoblast differentiation factor RUNX2 (Cbfa1/AML3/Pebp2alpha A) is inhibited by tumor necrosis factor-alpha, Linda C. Gilbert, Xiaofei He, Paul K. Farmer, Janet Rubin, Hicham Drissi, Andre J. Van Wijnen, Jane B. Lian, Gary S. Stein, and Mark S. Nanes

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Pteridine reductase mechanism correlates pterin metabolism with drug resistance in trypanosomatid parasites, David G. Gourley, Alexander W. Schuttelkopf, Gordon A. Leonard, James Luba, Larry W. Hardy, Stephen M. Beverley, and William N. Hunter

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Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing, Alla Grishok, Amy E. Pasquinelli, Darryl Conte Jr., Na Li, Susan Parrish, Ilho Ha, David L. Baillie, Andrew Z. Fire, Gary Ruvkun, and Craig C. Mello

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Interaction between the noncatalytic region of Sid1p kinase and Cdc14p is required for full catalytic activity and localization of Sid1p, David A. Guertin and Dannel McCollum

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CCAAT/enhancer-binding proteins (C/EBP) beta and delta activate osteocalcin gene transcription and synergize with Runx2 at the C/EBP element to regulate bone-specific expression, Soraya E. Gutierrez, Amjad Javed, Daniel K. Tennant, Monique van Rees, Martin A. Montecino, Gary S. Stein, Janet L. Stein, and Jane B. Lian

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Motor function and regulation of myosin X, Kazuaki Homma, Junya Saito, Reiko Ikebe, and Mitsuo Ikebe

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The core of the motor domain determines the direction of myosin movement, Kazuaki Homma, Misako Yoshimura, Junya Saito, Reiko Ikebe, and Mitsuo Ikebe

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Skin allograft maintenance in a new synchimeric model system of tolerance, Neal N. Iwakoshi, Thomas G. Markees, Nicole A. Turgeon, Thomas B. Thornley, Amy Cuthbert, Jean Leif, Nancy E. Phillips, John P. Mordes, Dale L. Greiner, and Aldo A. Rossini

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Human RAD52 exhibits two modes of self-association, Wasantha Ranatunga, Doba Jackson, Janice A. Lloyd, Anthony L. Forget, Kendall L. Knight, and Gloria E. O. Borgstahl

Publications from 2000

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A profound deficiency in thymic progenitor cells in mice lacking Jak3, Allison Michelle Baird, Julie Ann Lucas, and Leslie J. Berg

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Functional delineation of three groups of the ATP-dependent family of chromatin remodeling enzymes, Laurie A. Boyer, Colin Logie, Edgar Bonte, Peter B. Becker, Paul A. Wade, Alan P. Wolffe, Carl Wu, Anthony N. Imbalzano, and Craig L. Peterson

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Actin-related proteins (Arps): conformational switches for chromatin-remodeling machines, Laurie A. Boyer and Craig L. Peterson

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Roles of the histone H2A-H2B dimers and the (H3-H4)(2) tetramer in nucleosome remodeling by the SWI-SNF complex, Laurie A. Boyer, Xiao Shao, Richard H. Ebright, and Craig L. Peterson

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Role of human cytomegalovirus immediate-early proteins in cell growth control, Jonathan Patrick Castillo, Andrew D. Yurochko, and Timothy F. Kowalik

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JNK1 is required for T cell-mediated immunity against Leishmania major infection, Stephanie L. Constant, Chen Dong, Derek D. Yang, Mark Allen Wysk, Roger J. Davis, and Richard A. Flavell

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The kinetic mechanism of the hairpin ribozyme in vivo: influence of RNA helix stability on intracellular cleavage kinetics, Christine Patricia Donahue, Ramesh S. Yadava, Steven M. Nesbitt, and Martha J. Fedor

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Transcriptional autoregulation of the bone related CBFA1/RUNX2 gene, Hicham Drissi, Quyen Luc, A. Rauf Shakoori, Susana Chuva De Sousa Lopes, Je-Yong Choi, Anne Terry, Ming Hu, Stephen N. Jones, James C. Neil, Jane B. Lian, Janet L. Stein, Andre J. Van Wijnen, and Gary S. Stein

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Molecular determinants that mediate selective activation of p38 MAP kinase isoforms, Herve Enslen, Deborah Marie Brancho, and Roger J. Davis

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A role for the lissencephaly gene LIS1 in mitosis and cytoplasmic dynein function, Nicole E. Faulkner, Denis L. Dujardin, Chin-Yin Tai, Kevin T. Vaughan, Christopher B. O'Connell, Yu-Li Wang, and Richard B. Vallee

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Modified intranuclear organization of regulatory factors in human acute leukemias: reversal after treatment, Jeffrey A. Gordon, Shirwin M. Pockwinse, F. Marc Stewart, Peter J. Quesenberry, Tatsuya Nakamura, Carlo M. Croce, Jane B. Lian, Janet L. Stein, Andre J. Van Wijnen, and Gary S. Stein

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Genetic requirements for inheritance of RNAi in C. elegans, Alla Grishok, Hiroaki Tabara, and Craig C. Mello

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The role of the sid1p kinase and cdc14p in regulating the onset of cytokinesis in fission yeast, David A. Guertin, Louise Chang, Farid Irshad, K. Lance Gould, and Dannel McCollum

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ATP-dependent substrate occlusion by the human erythrocyte sugar transporter, Karen Schray Heard, Nancy J. Fidyk, and Anthony Carruthers

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Snail/slug family of repressors: slowly going into the fast lane of development and cancer, Kirugaval Hemavathy, Shovon Imtiaz Ashraf, and Y. Tony Ip

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Expression screening of factors binding to the osteocalcin bone-specific promoter element OC box I: isolation of a novel osteoblast differentiation-specific factor, Heidi M. Hoffmann, Jack Green, Andre J. Van Wijnen, Janet L. Stein, Gary S. Stein, and Jane B. Lian

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Mob1p interacts with the Sid2p kinase and is required for cytokinesis in fission yeast, Ming-Chin Hou, Jeffrey Salek, and Dannel McCollum

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SWI-SNF-mediated nucleosome remodeling: role of histone octamer mobility in the persistence of the remodeled state, Mariela Jaskelioff, Igor M. Gavin, Craig L. Peterson, and Colin Logie

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Groucho/TLE/R-esp proteins associate with the nuclear matrix and repress RUNX (CBF(alpha)/AML/PEBP2(alpha)) dependent activation of tissue-specific gene transcription, Amjad Javed, Bo Guo, Scott W. Hiebert, Je-Yong Choi, Jack Green, Shan-Chuan Zhao, Mark A. Osborne, Stefano Stifani, Janet L. Stein, Jane B. Lian, Andre J. Van Wijnen, and Gary S. Stein

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Tolerance to acute ethanol inhibition of peptide hormone release in the isolated neurohypophysis, Thomas K. Knott, Govindan Dayanithi, Vincent Coccia, Edward E. Custer, Jose R. Lemos, and Steven N. Treistman

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A role for nuclear PTEN in neuronal differentiation, Mahesh B. Lachyankar, Nazneen Sultana, Christopher M. Schonhoff, Prasenjit Mitra, Wojciech Poluha, Stephen Lambert, Peter J. Quesenberry, N. Scott Litofsky, Lawrence D. Recht, Roya Nabi, Susan J. Miller, Shinji Ohta, Benjamin G. Neel, and Alonzo H. Ross

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Marrow transplantation and targeted gene therapy to the skeleton, Jane B. Lian, Gary S. Stein, Janet L. Stein, and Andre J. Van Wijnen

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Transcriptional control of osteoblast differentiation, Jane B. Lian, Gary S. Stein, Janet L. Stein, and Andre J. Van Wijnen

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Altered expression of BRCA1, BRCA2, and a newly identified BRCA2 exon 12 deletion variant in malignant human ovarian, prostate, and breast cancer cell lines, Christine Rauh-Adelmann, Kin-Mang Lau, Nari Sabeti, John P. Long, Samuel C. Mok, and Shuk-Mei Ho

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Sensitivity of bacteriophage RB69 DNA polymerase to N2-(p-n-butylphenyl)-2'-deoxyguanosine nucleotides, James Michael Walker Stattel and George E. Wright

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Interrelationships of transcriptional machinery with nuclear architecture, Gary S. Stein, Andre J. Van Wijnen, Janet L. Stein, and Jane B. Lian

Publications from 1999

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The insulin receptor tyrosine kinase substrate p58/53 and the insulin receptor are components of CNS synapses, Mary-Alice Abbott, David G. Wells, and Justin R. Fallon

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AP-1 and vitamin D receptor (VDR) signaling pathways converge at the rat osteocalcin VDR element: requirement for the internal activating protein-1 site for vitamin D-mediated trans-activation, Fauzia Aslam, Laura R. McCabe, Baruch Frenkel, Andre J. Van Wijnen, Gary S. Stein, Jane B. Lian, and Janet L. Stein

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The travels of mRNAs through all cells large and small, Gary J. Bassell, Yuri Oleynikov, and Robert H. Singer

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Overexpression of truncated Nmd3p inhibits protein synthesis in yeast, Jonathan Philip Belk, Feng He, and Allan Jacobson

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Hepatic iron concentration: noninvasive estimation by means of MR imaging techniques, Herbert L. Bonkovsky, Richard B. Rubin, Edward Earl Cable, Ashley Davidoff, Tammo H. Pels Rijcken, and David D. Stark

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Detection of dopaminergic cell loss and neural transplantation using pharmacological MRI, PET and behavioral assessment, Yin Ching I. Chen, Anna-Liisa Brownell, Wendy R. Galpern, Ole Isacson, Mikhail Bogdanov, M. Flint Beal, Eli Livni, Bruce R. Rosen, and Bruce G. Jenkins

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Alcohol modulation of calcium-activated potassium channels, Alejandro M. Dopico, Benson Chu, Jose R. Lemos, and Steven N. Treistman

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Effect of CpG methylation on isotype and magnitude of antibody responses to influenza hemagglutinin-expressing plasmid, David Marc Feltquate and Harriet L. Robinson

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Bystander target cell lysis and cytokine production by dengue virus-specific human CD4(+) cytotoxic T-lymphocyte clones, Susan J. Gagnon, Francis A. Ennis, and Alan L. Rothman

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Centrosome proteins: a major class of autoantigens in scleroderma, Irina Catrinel Gavanescu, Dolores Vazquez-Abad, J. McCauley, Jean-Luc Senecal, and Stephen J. Doxsey

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Crystallization of recombinant Leishmania major pteridine reductase 1 (PTR1), David G. Gourley, James Luba, Larry W. Hardy, Stephen M. Beverley, and William N. Hunter

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Short dysfunctional telomeres impair tumorigenesis in the INK4a(delta2/3) cancer-prone mouse, Roger A. Greenberg, Lynda Chin, Andrea M. Femino, Kee-Ho Lee, Geoffrey J. Gottlieb, Robert H. Singer, Carol W. Greider, and Ronald A. DePinho

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Interaction and specificity of Rel-related proteins in regulating Drosophila immunity gene expression, Zhiqiang Han and Y. Tony Ip

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Osteoblast-specific gene expression after transplantation of marrow cells: implications for skeletal gene therapy, Zhen Hou, Que Nguyen, Baruch Frenkel, Susan K. Nilsson, Moira Milne, Andre J. Van Wijnen, Janet L. Stein, Peter J. Quesenberry, Jane B. Lian, and Gary S. Stein

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Diabetes prone BB rats are severely deficient in natural killer T cells, Neal N. Iwakoshi, Dale L. Greiner, Aldo A. Rossini, and John P. Mordes

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Treatment of allograft recipients with donor-specific transfusion and anti-CD154 antibody leads to deletion of alloreactive CD8+ T cells and prolonged graft survival in a CTLA4-dependent manner, Neal N. Iwakoshi, John P. Mordes, Thomas G. Markees, Nancy E. Phillips, Aldo A. Rossini, and Dale L. Greiner

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Human CD8+ and CD4+ T lymphocyte memory to influenza A viruses of swine and avian species, Julie Marie Jameson, John Cruz, Masanori Terajima, and Francis A. Ennis

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Multiple Cbfa/AML sites in the rat osteocalcin promoter are required for basal and vitamin D-responsive transcription and contribute to chromatin organization, Amjad Javed, Soraya E. Gutierrez, Martin Montecino, Andre J. Van Wijnen, Janet L. Stein, Gary S. Stein, and Jane B. Lian

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Heme biosynthesis in a chicken hepatoma cell line (LMH): comparison with primary chick embryo liver cells (CELC), Sridevi Kolluri, Kimberly K. Elbirt, and Herbert L. Bonkovsky

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Stop-flow analysis of cooperative interactions between GLUT1 sugar import and export sites, Lisa A. Sultzman and Anthony Carruthers

Publications from 1998

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Transcription sans TBP, Lynne Marie Apone and Michael R. Green

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Broad, but not universal, transcriptional requirement for yTAFII17, a histone H3-like TAFII present in TFIID and SAGA, Lynne M. Apone, Ching-man A. Virbasius, Frank C. P. Holstege, Jing Wang, Richard A. Young, and Michael R. Green

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Transcriptional control: repression by local chromatin modification, Shovon Imtiaz Ashraf and Y. Tony Ip

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HiNF-D (CDP-cut/CDC2/cyclin A/pRB-complex) influences the timing of IRF-2-dependent cell cycle activation of human histone H4 gene transcription at the G1/S phase transition, Farah Aziz, Andre J. Van Wijnen, Janet L. Stein, and Gary S. Stein

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The integrated activities of IRF-2 (HiNF-M), CDP/cut (HiNF-D) and H4TF-2 (HiNF-P) regulate transcription of a cell cycle controlled human histone H4 gene: mechanistic differences between distinct H4 genes, Farah Aziz, Andre J. Van Wijnen, Patricia S. Vaughan, Shujian Wu, A. Rauf Shakoori, Jane B. Lian, Kenneth J. Soprano, Janet L. Stein, and Gary S. Stein

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DNA polymerase III of Gram-positive eubacteria is a zinc metalloprotein conserving an essential finger-like domain, Marjorie H. Barnes, Christopher Leo, and Neal C. Brown

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Sorting of beta-actin mRNA and protein to neurites and growth cones in culture, Gary J. Bassell, Honglai Zhang, Anne L. Byrd, Andrea M. Femino, Robert H. Singer, Krishan L. Taneja, Lawrence M. Lifshitz, Ira M. Herman, and Kenneth S. Kosik

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Immune mediated and inherited defences against flaviviruses, Margo A. Brinton, Ichiro Kurane, Anuja Mathew, Lingling Zeng, Pei Yong Shi, Alan L. Rothman, and Francis A. Ennis

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In vivo PET imaging in rat of dopamine terminals reveals functional neural transplants, Anna-Liisa Brownell, Eli Livni, Wendy R. Galpern, and Ole Isacson

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Developmental association of the beta-galactoside-binding protein galectin-1 with the nuclear matrix of rat calvarial osteoblasts, Je-Yong Choi, Andre J. Van Wijnen, Fauzia Aslam, John D. Leszyk, Janet L. Stein, Gary S. Stein, Jane B. Lian, and Sheldon Penman

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Pericentrin and gamma-tubulin form a protein complex and are organized into a novel lattice at the centrosome, Jason B. Dictenburg, Wendy Cherie Zimmerman, Cynthia A. Sparks, Aaron Isadore Young, Charles A. Vidair, Yixian Zheng, Walter A. Carrington, Fredric S. Fay, and Stephen J. Doxsey

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Defective T cell differentiation in the absence of Jnk1, Chen Dong, Derek D. Yang, Mark Allen Wysk, Alan J. Whitmarsh, Roger J. Davis, and Richard A. Flavell

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Localization of motor-related proteins and associated complexes to active, but not inactive, centromeres, Nicole E. Faulkner, Baldev Vig, Christophe de Jesus Echeverri, Linda Wordeman, and Richard B. Vallee

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Visualization of single RNA transcripts in situ, Andrea M. Femino, Fredric S. Fay, Kevin E. Fogarty, and Robert H. Singer

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Blockade of CD40-CD154 interferes with human T cell engraftment in scid mice, Teresa M. Foy, Melissa McIlraith, Sally R. Masters, Jonathan J. Dunn, Aldo A. Rossini, Leonard D. Shultz, RuthAnn M. Hesselton, Eric James Wagar, Peter E. Lipsky, Randolph J. Noelle, and Dale L. Greiner

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A conserved p38 mitogen-activated protein kinase pathway regulates Drosophila immunity gene expression, Zhiqiang Han, Herve Enslen, Xiaodi Hu, Xiangjun Meng, I-Huan Wu, Tamera Barrett, Roger J. Davis, and Y. Tony Ip

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Membrane-bound glyceraldehyde-3-phosphate dehydrogenase and multiphasic erythrocyte sugar transport, Karen Schray Heard, Melissa Diguette, Alex C. Heard, and Anthony Carruthers

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Increased expression of estrogen receptor beta in chemically transformed human breast epithelial cells, Y F. Hu, Kin-Mang Lau, S. M. Ho, and J. Russo

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High frequency apoptosis of recent thymic emigrants in the liver of lymphopenic diabetes-prone BioBreeding rats, Neal N. Iwakoshi, Irving Goldschneider, Frances Tausche, John P. Mordes, Aldo A. Rossini, and Dale L. Greiner

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Human cytotoxic T-lymphocyte repertoire to influenza A viruses, Julie Marie Jameson, John Cruz, and Francis A. Ennis

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Structural and physiologic determinants of human erythrocyte sugar transport regulation by adenosine triphosphate, Kara B. Levine, Erin K. Cloherty, Nancy J. Fidyk, and Anthony Carruthers

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Immunogenicity of DNA vaccines expressing human immunodeficiency virus type 1 envelope glycoprotein with and without deletions in the V1/2 and V3 regions, Shan Lu, Richard T. Wyatt, Joan F. L. Richmond, Farah Mustafa, Shixia Wang, Jiayu Weng, David C. Montefiori, Joseph Sodroski, and Harriet L. Robinson

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Synthesis and biochemical study of N2-(p-n-butylphenyl)-2'-deoxyguanosine 5'-(alpha,beta-imido)triphosphate (BuPdGMPNHPP): a non-substrate inhibitor of B family DNA polymerases, James Michael Walker Stattel, Ivan Yanachkov, and George E. Wright

Publications from 1997

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Runt homology domain proteins in osteoblast differentiation: AML3/CBFA1 is a major component of a bone-specific complex, Chaitali Banerjee, Laura R. McCabe, Je-Yong Choi, Scott W. Hiebert, Janet L. Stein, Gary S. Stein, and Jane B. Lian

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mRNA and cytoskeletal filaments, Gary J. Bassell and Robert H. Singer

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Mouse RT6 locus 1 and rat RT6.2 are NAD+. Arginine ADP-ribosyltransferases with auto-ADP-ribosylation activity, Rita Bortell, Mark R. Rigby, Linda A. Stevens, Joel Moss, Toshihiro Kanaitsuka, John P. Mordes, Dale L. Greiner, and Aldo A. Rossini

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Mechanism of induction of heme oxygenase by metalloporphyrins in primary chick embryo liver cells: evidence against a stress-mediated response, Edward Earl Cable, Otto S. Gildemeister, Joyce A. Pepe, Richard W. Lambrecht, and Herbert L. Bonkovsky

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Detection of dopaminergic neurotransmitter activity using pharmacologic MRI: correlation with PET, microdialysis, and behavioral data, Yin Ching I. Chen, Wendy R. Galpern, Anna-Liisa Brownell, Russell T. Matthews, Mikhail Bogdanov, Ole Isacson, John R. Keltner, M. Flint Beal, Bruce R. Rosen, and Bruce G. Jenkins

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Enhanced human CD4+ T cell engraftment in beta2-microglobulin-deficient NOD-scid mice, Sherri W. Christianson, Dale L. Greiner, RuthAnn M. Hesselton, Jean H. Leif, Eric James Wagar, Isabelle B. Schweitzer, Thiruchandurai V. Rajan, Bruce Gott, Derry C. Roopenian, and Leonard D. Shultz

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Modulation of two cloned potassium channels by 1-alkanols demonstrates different cutoffs, Benson Chu and Steven N. Treistman

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A lipidated anti-Tat antibody enters living cells and blocks HIV-1 viral replication, William W. Cruikshank, Susan R. Doctrow, Melissa S. Falvo, Karl Huffman, Joseph Walter Maciaszek, Gregory A. Viglianti, Jay Raina, Hardy Kornfeld, and Bernard Malfroy