This collection showcases the books, journal articles, book reviews, and other publications and presentations written by faculty and researchers of the Department of Biochemistry and Molecular Pharmacology.

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Publications from 2015

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Differential Toxicity of Nuclear RNA Foci versus Dipeptide Repeat Proteins in a Drosophila Model of C9ORF72 FTD/ALS, Helene Tran, Sandra Almeida, Jill Moore, Tania F. Gendron, UmaDevi Chalasani, Yubing Lu, Xing Du, Jeffrey A. Nickerson, Leonard Petrucelli, Zhiping Weng, and Fen-Biao Gao

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Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data, Junko Tsuji and Zhiping Weng

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Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes, Shikui Tu, Monica Z. Wu, Jie Wang, Asher D. Cutter, Zhiping Weng, and Julie M. Claycomb

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Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex, Will Van Treuren, Loganathan Ponnusamy, R Jory Brinkerhoff, Antonio Gonzalez, Christian M. Parobek, Jonathan J. Juliano, Theodore G. Andreadis, Richard C. Falco, Lorenza Beati Ziegler, Nicholas J. Hathaway, Corinna Keeler, Michael Emch, Jeffrey A. Bailey, R. Michael Roe, Charles S. Apperson, Rob Knight, and Steven R. Meshnick

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Massively parallel sampling of lattice proteins reveals foundations of thermal adaptation, Sergey V. Venev and Konstantin B. Zeldovich

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Activated mTORC1 promotes long-term cone survival in retinitis pigmentosa mice, Aditya Venkatesh, Shan Ma, Yun Z. Le, Michael N. Hall, Markus A. Ruegg, and Claudio Punzo

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Jagged 1 Rescues the Duchenne Muscular Dystrophy Phenotype, Natassia M. Vieira, Ingegerd Elvers, Matthew S. Alexander, Yuri B. Moreira, Alal Eran, Juliana P. Gomes, Jamie L. Marshall, Elinor K. Karlsson, Sergio Verjovski-Almeida, Kerstin Lindblad-Toh, Louis M. Kunkel, and Mayana Zatz

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Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2, Thom Vreven, Iain H. Moal, Anna Vangone, Brian G. Pierce, Panagiotis L. Kastritis, Mieczyslaw Torchala, Raphael Chaleil, Brian Jimenez-Garcia, Paul A. Bates, Juan Fernandez-Recio, Alexandre M. J. J. Bonvin, and Zhiping Weng

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Adenovirus-Mediated Somatic Genome Editing of Pten by CRISPR/Cas9 in Mouse Liver in Spite of Cas9-Specific Immune Responses, Dan Wang, Haiwei Mou, Shaoyong Li, Yingxiang Li, Soren Hough, Karen Tran, Jia Li, Hao Yin, Daniel G. Anderson, Erik J. Sontheimer, Zhiping Weng, Guangping Gao, and Wen Xue

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Slicing and Binding by Ago3 or Aub Trigger Piwi-Bound piRNA Production by Distinct Mechanisms, Wei Wang, Bo W. Han, Cindy Tipping, Daniel Tianfang Ge, Zhao Zhang, Zhiping Weng, and Phillip D. Zamore

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Condensin promotes the juxtaposition of DNA flanking its loading site in Bacillus subtilis, Xindan Wang, Tung B. L. Le, Bryan R. Lajoie, Job Dekker, Michael T. Laub, and David Z. Rudner

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High-resolution chromatin dynamics during a yeast stress response, Assaf Weiner, Tsung-Han S. Hsieh, Alon Appleboim, Hsiuyi V. Chen, Ayelet Rahat, Ido Amit, Oliver J. Rando, and Nir Friedman

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Systemic AAV9 gene transfer in adult GM1 gangliosidosis mice reduces lysosomal storage in CNS and extends lifespan, Cara M. Weismann, Jennifer Ferreira, Allison M. Keeler, Qin Su, Linghua Qiu, Scott A. Shaffer, Zuoshang Xu, Guangping Gao, and Miguel Sena-Esteves

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Molecular targeting of protein arginine deiminases to suppress colitis and prevent colon cancer, Erin E. Witalison, Xiangli Cui, Corey P. Causey, Paul R. Thompson, and Lorne J. Hofseth

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Inhibiting protein arginine deiminases has antioxidant consequences., Erin E. Witalison, Xiangli Cui, Anne B. Hofseth, Venkataraman Subramanian, Corey P. Causey, Paul R. Thompson, and Lorne J. Hofseth

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Protein Arginine Deiminases and Associated Citrullination: Physiological Functions and Diseases Associated with Dysregulation., Erin E. Witalison, Paul R. Thompson, and Lorne J. Hofseth

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Subnuclear domain proteins in cancer cells support the functions of RUNX2 in the DNA damage response, Seungchan Yang, Alexandre Jose Christino Quaresma, Jeffrey A. Nickerson, Karin M. Green, Scott A. Shaffer, Anthony N. Imbalzano, Lori A. Martin-Buley, Jane B. Lian, Janet L. Stein, Andre J. Van Wijnen, and Gary S. Stein

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An emerging role for prdm family genes in dorsoventral patterning of the vertebrate nervous system, Denise A. Zannino and Charles G. Sagerstrom

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Positive Selection Drives Preferred Segment Combinations during Influenza Virus Reassortment, Konstantin B. Zeldovich, Ping Liu, Nicholas Renzette, Matthieu Foll, Serena T. Pham, Sergey V. Venev, Glen R. Gallagher, Daniel N. Bolon, Evelyn A. Kurt-Jones, Jeffrey D. Jensen, Daniel R. Caffrey, Celia A. Schiffer, Timothy F. Kowalik, Jennifer P. Wang, and Robert W. Finberg

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Cross-talk between PRMT1-mediated methylation and ubiquitylation on RBM15 controls RNA splicing, Li Zhang, Ngoc-Tung Tran, Hairui Su, Rui Wang, Yuheng Lu, Haiping Tang, Sayura Aoyagi, Ailan Guo, Alireza Khodadadi-Jamayran, Dewang Zhou, Kun Qian, Todd Hricik, Jocelyn Cote, Xiaosi Han, Wenping Zhou, Suparna Laha, Omar Abdel-Wahab, Ross L. Levine, Glen Raffel, Yanyan Liu, Dongquan Chen, Haitao Li, Tim Townes, Hengbin Wang, Haiteng Deng, Yujun George Zheng, Christina Leslie, Minkui Luo, and Xinyang Zhao

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Increased CRF signalling in a ventral tegmental area-interpeduncular nucleus-medial habenula circuit induces anxiety during nicotine withdrawal, Rubing Zhao-Shea, Steven Degroot, Liwang Liu, Markus Vallaster, Xueyan Pang, Qin Su, Guangping Gao, Oliver J. Rando, Gilles E. Martin, Olivier George, Paul D. Gardner, and Andrew R. Tapper

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Modulation of HIV protease flexibility by the T80N mutation, Hao Zhou, Shangyang Li, John Badger, Ellen A. Nalivaika, Yufeng Cai, Jennifer E. Foulkes-Murzycki, Celia A. Schiffer, and Lee Makowski

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Local sequence assembly reveals a high-resolution profile of somatic structural variations in 97 cancer genomes, Jiali Zhuang and Zhiping Weng

Publications from 2014

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High-throughput sequencing analysis of post-liver transplantation HCV E2 glycoprotein evolution in the presence and absence of neutralizing monoclonal antibody, Gregory J. Babcock, Sowmya Iyer, Heidi L. Smith, Yan Wang, Kirk Rowley, Donna M. Ambrosino, Phillip D. Zamore, Brian G. Pierce, Deborah C. Molrine, and Zhiping Weng

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A bayesian MCMC approach to assess the complete distribution of fitness effects of new mutations: uncovering the potential for adaptive walks in challenging environments, Claudia Bank, Ryan T. Hietpas, Alex Wong, Daniel N. Bolon, and Jeffrey D. Jensen

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Viewing protein fitness landscapes through a next-gen lens, Jeffrey I. Boucher, Pamela Cote, Julia Flynn, Li Jiang, Aneth Laban, Parul Mishra, Benjamin P. Roscoe, and Daniel N. Bolon

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Drug Resistance Mutations Alter Dynamics of Inhibitor-Bound HIV-1 Protease, Yufeng Cai, Wazo Myint, Janet L. Paulsen, Celia A. Schiffer, Rieko Ishima, and Nese Kurt Yilmaz

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High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm, Benjamin R. Carone, Jui-Hung Hung, Sarah J. Hainer, Min-Te Chou, Dawn M. Carone, Zhiping Weng, Thomas G. Fazzio, and Oliver J. Rando

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Post-transcriptional regulation of gene expression in innate immunity, Susan Carpenter, Emiliano P. Ricci, Blandine C. Mercier, Melissa J. Moore, and Katherine A. Fitzgerald

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Principles of regulatory information conservation between mouse and human, Yong Cheng, Zhihai Ma, Bong-Hyun Kim, Weisheng Wu, Philip Cayting, Alan P. Boyle, Vasavi Sundaram, Xiaoyun Xing, Nergiz Dogan, Jingjing Li, Ghia Euskirchen, Shin Lin, Yiing Lin, Axel Visel, Trupti Kawli, Xinqiong Yang, Dorrelyn Patacsil, Cheryl A. Keller, Belinda Giardine, Anshul Kundaje, Ting Wang, Len A. Pennacchio, Zhiping Weng, Ross C. Hardison, and Michael P. Snyder

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Cytoplasmic HIV-1 RNA is mainly transported by diffusion in the presence or absence of Gag protein, Jianbo Chen, David Grünwald, Luca Sardo, Andrea Galli, Sergey Plisov, Olga A Nikolaitchik, De Chen, Stephen Lockett, Daniel R. Larson, Vinay K. Pathak, and Wei-Shau Hu

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Endogenous U2.U5.U6 snRNA complexes in S. pombe are intron lariat spliceosomes, Weijun Chen, Hennady P. Shulha, Ami Ashar-Patel, Jing Yang, Karin M. Green, Charles C. Query, Nicholas R. Rhind, Zhiping Weng, and Melissa J. Moore

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A Feedback Loop Couples Musashi-1 Activity to Omega-9 Fatty Acid Biosynthesis: A Dissertation, Carina C. Clingman

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Allosteric inhibition of a stem cell RNA-binding protein by an intermediary metabolite, Carina C. Clingman, Laura M. Deveau, Samantha A. Hay, Ryan M. J. Genga, Shivender Shandilya, Francesca Massi, and Sean P. Ryder

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Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture, Job Dekker

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Structural basis for PI(4)P-specific membrane recruitment of the Legionella pneumophila effector DrrA/SidM, Claudia M. Del Campo, Ashwini K. Mishra, Yu-Hsiu Wang, Craig R. Roy, Paul A. Janmey, and David G. Lambright

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Insights into the mechanism of streptonigrin-induced protein arginine deiminase inactivation., Christina J. Dreyton, Erin D. Anderson, Venkataraman Subramanian, Dale L. Boger, and Paul R. Thompson

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Mechanistic studies of protein arginine deiminase 2: evidence for a substrate-assisted mechanism, Christina J. Dreyton, Bryan Knuckley, Justin E. Jones, Daniel M. Lewallen, and Paul R. Thompson

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Deimination of linker histones links neutrophil extracellular trap release with autoantibodies in systemic autoimmunity, Nishant Dwivedi, Indira Neeli, Nicolas Schall, Haibao Wan, Dominic M. Desiderio, Elena Csernok, Paul R. Thompson, Hayet Dali, Jean-Paul Briand, Sylviane Muller, and Marko Radic

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Influenza virus drug resistance: a time-sampled population genetics perspective, Matthieu Foll, Yu Ping Poh, Nicholas Renzette, Anna Ferrer Admetlla, Claudia Bank, Hyunjin Shim, Anna Sapfo Malaspinas, Gregory Ewing, Ping Liu, Daniel Wegmann, Daniel R. Caffrey, Konstantin B. Zeldovich, Daniel N. A. Bolon, Jennifer Wang, Timothy F. Kowalik, Celia A. Schiffer, Robert W. Finberg, and Jeffrey D. Jensen

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Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription, Luca Giorgetti, Rafael Galupa, Elphege P. Nora, Tristan Piolot, France Lam, Job Dekker, Guido Tiana, and Edith Heard

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An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins, Ankit Gupta, Ryan G. Christensen, Heather A. Bell, Mathew Goodwin, Ronak Y. Patel, Manishi Pandey, Metewo Selase Enuameh, Amy L. Rayla, Cong Zhu, Stacey Thibodeau-Beganny, Michael H. Brodsky, J. Keith Joung, Scot A. Wolfe, and Gary D. Stormo

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An improved predictive recognition model for Cys2-His2 zinc finger proteins, Ankit Gupta, Ryan G. Christensen, Heather A. Bell, Mathew Goodwin, Ronak Y. Patel, Manishi Pandey, Metewo Selase Enuameh, Amy L. Rayla, Cong Zhu, Stacey Thibodeau-Beganny, Michael H. Brodsky, J. Keith Joung, Scot A. Wolfe, and Gary D. Stormo

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Backbone flexibility of CDR3 and immune recognition of antigens, Jaafar N. Haidar, Wei Zhu, Jacqueline Lypowy, Brian G. Pierce, Amtul Bari, Kris Persaud, Xenia Luna, Marshall Snavely, Dale Ludwig, and Zhiping Weng

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Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor design, Brendan J. Hilbert, Steven R. Grossman, Celia A. Schiffer, and William E. Royer

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Dissecting cis and trans Determinants of Nucleosome Positioning: A Dissertation, Amanda L. Hughes

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Mechanisms underlying nucleosome positioning in vivo, Amanda Hughes and Oliver J. Rando

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Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease, Manolis Kellis, Job Dekker, Zhiping Weng, and Ross C. Hardison

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A co-CRISPR strategy for efficient genome editing in Caenorhabditis elegans, Heesun Kim, Takao Ishidate, Krishna S. Ghanta, Meetu Seth, Darryl Conte Jr., Masaki Shirayama, and Craig C. Mello

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Peptidylarginine deiminase inhibition reduces vascular damage and modulates innate immune responses in murine models of atherosclerosis., Jason S. Knight, Wei Luo, Alexander A. O'Dell, Srilakshmi Yalavarthi, Wenpu Zhao, Venkataraman Subramanian, Chiao Guo, Robert C. Grenn, Paul R. Thompson, Daniel T. Eitzman, and Mariana J. Kaplan

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Peptidylarginine deiminase inhibition disrupts NET formation and protects against kidney, skin and vascular disease in lupus-prone MRL/lpr mice., Jason S. Knight, Venkataraman Subramanian, Alexander A. O'Dell, Srilakshmi Yalavarthi, Wenpu Zhao, Carolyne K. Smith, Jeffrey B. Hodgin, Paul R. Thompson, and Mariana J. Kaplan

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Construction and application of site-specific artificial nucleases for targeted gene editing, Fatma O. Kok, Ankit Gupta, Nathan D. Lawson, and Scot A. Wolfe

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HIV-1 protease-substrate coevolution in nelfinavir resistance, Madhavi Kolli, Aysegul Ozen, Nese Kurt Yilmaz, and Celia A. Schiffer

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Hox regulation of transcription: more complex(es), Franck Ladam and Charles G. Sagerstrom

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Insight into the allosteric mechanism of Scapharca dimeric hemoglobin, Jennifer M. Laine, Miguel Amat, Brittany R. Morgan, William E. Royer, and Francesca Massi

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The Hitchhiker's guide to Hi-C analysis: Practical guidelines, Bryan R. Lajoie, Job Dekker, and Noam Kaplan

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Peptidylarginine deiminases: novel drug targets for prevention of neuronal damage following hypoxic ischemic insult (HI) in neonates., Sigrun Lange, Eridan Rocha-Ferreira, Laura Thei, Priyanka Mawjee, Kate Bennett, Paul R. Thompson, Venkataraman Subramanian, Anthony P. Nicholas, Donald Peebles, Mariya Hristova, and Gennadij Raivich

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Blind prediction of interfacial water positions in CAPRI, Marc F. Lensink, Iain H. Moal, Paul A. Bates, Panagiotis L. Kastritis, Adrien S.J. Melquiond, Ezgi Karaca, Christophe Schmitz, Marc van Dijk, Alexandre M.J.J. Bonvin, Miriam Eisenstein, Brian G. Pierce, Howook Hwang, Thom Vreven, and Zhiping Weng

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A FluoPol-ABPP PAD2 high-throughput screen identifies the first calcium site inhibitor targeting the PADs., Daniel M. Lewallen, Kevin L. Bicker, Franck Madoux, Peter Chase, Lynne Anguish, Scott Coonrod, Peter Hodder, and Paul R. Thompson

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Inhibiting AMPylation: a novel screen to identify the first small molecule inhibitors of protein AMPylation, Daniel M. Lewallen, Anju Sreelatha, Venkatasubramanian Dharmarajan, Franck Madoux, Peter Chase, Patrick R. Griffin, Kim Orth, Peter Hodder, and Paul R. Thompson

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The long noncoding RNA THRIL regulates TNFalpha expression through its interaction with hnRNPL, Zhonghan Li, Ti-Chun Chao, Kung-Yen Chang, Nianwei Lin, Veena S. Patil, Chisato Shimizu, Steven R. Head, Jane C. Burns, and Tariq M. Rana

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An Integrated Structural Mechanism for Relief of Autoinhibition and Membrane Targeting in Cytohesin Family Guanine Nucleotide Exchange Factors: A Dissertation, Andrew W. Malaby

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The middle X residue influences cotranslational N-glycosylation consensus site skipping, Heidi Malaby and William R. Kobertz

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Identification of Molecular Determinants that Shift Co- and Post-Translational N-Glycosylation Kinetics in Type I Transmembrane Peptides: A Dissertation, Heidi L. H. Malaby

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Angiomotins link F-actin architecture to Hippo pathway signaling, Sebastian Mana-Capelli, Murugan Paramasivam, Shubham Dutta, and Dannel McCollum

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Direct interactions promote eviction of the Sir3 heterochromatin protein by the SWI/SNF chromatin remodeling enzyme, Benjamin J. Manning and Craig L. Peterson

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Clot injection technique affects thrombolytic efficacy in a rat embolic stroke model: implications for translaboratory collaborations, Marilena Marinescu, James P. Bouley, Juyu Chueh, Marc Fisher, and Nils Henninger

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Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe, Takeshi Mizuguchi, Geoffrey Fudenberg, Sameet Mehta, Jon-Matthew Belton, Nitika Taneja, Hernan Diego Folco, Peter FitzGerald, Job Dekker, Leonid Mirny, Jemima Barrowman, and Shiv I. S. Grewal

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Angiogenic biomarkers for prediction of early preeclampsia onset in high-risk women, Tiffany A. Moore Simas, Sybil L. Crawford, Susanne Bathgate, Jing Yan, Laura Robidoux, Melissa J. Moore, and Sharon E. Maynard

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Cnidarian microRNAs frequently regulate targets by cleavage, Yehu Moran, David Fredman, Daniela Praher, Xin Zhiguo Li, Liang Meng Wee, Fabian Rentzsch, Phillip D. Zamore, Ulrich Technau, and Herve Seitz

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Calmodulation meta-analysis: Predicting calmodulin binding via canonical motif clustering, Karen Mruk, Brian M. Farley, Alan W. Ritacco, and William R. Kobertz

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To protect or reject, Mary Munson

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Early Folding Biases in the Folding Free-Energy Surface of βα-Repeat Proteins: A Dissertation, Robert P. Nobrega

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Modulation of frustration in folding by sequence permutation, Robert P. Nobrega, Karunesh Arora, Sagar V. Kathuria, Rita Graceffa, Raul A. Barrea, Liang Guo, Srinivas Chakravarthy, Osman Bilsel, Thomas C. Irving, Charles L. Brooks 3rd, and C. Robert Matthews

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Structural basis and distal effects of Gag substrate coevolution in drug resistance to HIV-1 protease, Aysegul Ozen, Kuan-Hung Lin, Nese Kurt Yilmaz, and Celia A. Schiffer

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ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers, Brian G. Pierce, Kevin Wiehe, Howook Hwang, Bong-Hyun Kim, Thom Vreven, and Zhiping Weng

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Regulation of cyclin-substrate docking by a G1 arrest signaling pathway and the Cdk inhibitor Far1, Patricia A. Pope, Samyabrata Bhaduri, and Peter M. Pryciak

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Drug resistance conferred by mutations outside the active site through alterations in the dynamic and structural ensemble of HIV-1 protease, Debra A. Ragland, Ellen A. Nalivaika, Madhavi N. L. Nalam, Kristina L. Prachanronarong, Hong Cao, Rajintha M. Bandaranayake, Yufeng Cai, Nese Kurt Yilmaz, and Celia A. Schiffer

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Evolution of the influenza A virus genome during development of oseltamivir resistance in vitro, Nicholas Renzette, Daniel R. Caffrey, Konstantin B. Zeldovich, Ping Liu, Glen R. Gallagher, Daniel Aiello, Alyssa J. Porter, Evelyn A. Kurt-Jones, Daniel N. Bolon, Yu-Ping Poh, Jeffrey D. Jensen, Celia A. Schiffer, Timothy F. Kowalik, Robert W. Finberg, and Jennifer P. Wang

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Staufen1 senses overall transcript secondary structure to regulate translation, Emiliano P. Ricci, Alper Kucukural, Can Cenik, Blandine C. Mercier, Guramrit Singh, Erin E. Heyer, Ami Ashar-Patel, Lingtao Peng, and Melissa J. Moore

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Analyses of All Possible Point Mutations within a Protein Reveals Relationships between Function and Experimental Fitness: A Dissertation, Benjamin P. Roscoe

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Systematic exploration of ubiquitin sequence, E1 activation efficiency, and experimental fitness in yeast, Benjamin P. Roscoe and Daniel N. A. Bolon

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Putting the Pieces Together: Exons and piRNAs: A Dissertation, Christian K. Roy

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Using unnatural amino acid mutagenesis to probe the regulation of PRMT1., Heather L. Rust, Venkataraman Subramanian, Graham M. West, Douglas D. Young, Peter G. Schultz, and Paul R. Thompson

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Kinome-wide functional analysis highlights the role of cytoskeletal remodeling in somatic cell reprogramming, Kumi Sakurai, Indrani Talukdar, Veena S. Patil, Jason Dang, Zhonghan Li, Kung-Yen Chang, Chih-Chung Lu, Violaine Delorme-Walker, Celine Dermardirossian, Karen Anderson, Dorit Hanein, Chao-Shun Yang, Dongmei Wu, Yang Liu, and Tariq M. Rana

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Functions of FUS/TLS from DNA repair to stress response: implications for ALS, Reddy Ranjith Kumar Sama, Catherine L. Ward, and Daryl A. Bosco

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A computational analysis of the structural determinants of APOBEC3's catalytic activity and vulnerability to HIV-1 Vif, Shivender Shandilya, Markus-Frederik Bohn, and Celia A. Schiffer

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Regulation of histone H3K4 methylation in brain development and disease, Erica Shen, Hennady P. Shulha, Zhiping Weng, and Schahram Akbarian

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A novel role for protein arginine deiminase 4 in pluripotency: the emerging role of citrullinated histone H1 in cellular programming., Daniel J. Slade, Sachi Horibata, Scott A. Coonrod, and Paul R. Thompson

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Chemical and biological methods to detect post-translational modifications of arginine., Daniel J. Slade, Venkataraman Subramanian, Jakob Fuhrmann, and Paul R. Thompson

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Pluripotency: citrullination unravels stem cells, Daniel J. Slade, Venkataraman Subramanian, and Paul R. Thompson

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Neutrophil extracellular trap-derived enzymes oxidize high-density lipoprotein: an additional proatherogenic mechanism in systemic lupus erythematosus., Carolyne K. Smith, Anuradha Vivekanandan-Giri, Chongren Tang, Jason S. Knight, Anna Mathew, Robin L. Padilla, Brenda W. Gillespie, Carmelo Carmona-Rivera, Xiaodan Liu, Venkataraman Subramanian, Sarfaraz Hasni, Paul R. Thompson, Jay W. Heinecke, Rajiv Saran, Subramaniam Pennathur, and Mariana J. Kaplan

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Structural analysis of asunaprevir resistance in HCV NS3/4A protease, Djade Soumana, Akbar Ali, and Celia A. Schiffer

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Crystal structure of Streptococcus pyogenes EndoS, an immunomodulatory endoglycosidase specific for human IgG antibodies, Beatriz Trastoy, Joseph V. Lomino, Brian G. Pierce, Lester G. Carter, Sebastian Gunther, John P. Giddens, Greg A. Snyder, Thomas M. Weiss, Zhiping Weng, Lai-Xi Wang, and Eric J. Sundberg

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Modulation of calcium-induced cell death in human neural stem cells by the novel peptidylarginine deiminase-AIF pathway., Kin Pong U, Venkataraman Subramanian, Antony P. Nicholas, Paul R. Thompson, and Patrizia Ferretti

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Evaluating template-based and template-free protein-protein complex structure prediction, Thom Vreven, Howook Hwang, Brian G. Pierce, and Zhiping Weng

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Resistance to vemurafenib resulting from a novel mutation in the BRAFV600E kinase domain, Timothy R. Wagenaar, Leyuan Ma, Benjamin P. Roscoe, Sung Mi Park, Daniel N. Bolon, and Michael R. Green

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Widespread spinal cord transduction by intrathecal injection of rAAV delivers efficacious RNAi therapy for amyotrophic lateral sclerosis, Hongyan Wang, Bin Yang, Linghua Qiu, Chunxing Yang, Joshua Kramer, Qin Su, Yansu Guo, Robert H. Brown Jr., Guangping Gao, and Zuoshang Xu

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Protein arginine methyltransferase 5 catalyzes substrate dimethylation in a distributive fashion., Min Wang, Jakob Fuhrmann, and Paul R. Thompson

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The initial uridine of primary piRNAs does not create the tenth adenine that Is the hallmark of secondary piRNAs, Wei Wang, Mayu Yoshikawa, Bo W. Han, Natsuko Izumi, Yukihide Tomari, Zhiping Weng, and Phillip D. Zamore