Title

Analyzing Microarray Data

UMMS Affiliation

Program in Bioinformatics and Integrative Biology; Department of Biochemistry and Molecular Pharmacology

Date

8-29-2016

Document Type

Article

Disciplines

Bioinformatics | Computational Biology

Abstract

Because there is no widely used software for analyzing RNA-seq data that has a graphical user interface, this protocol provides an example of analyzing microarray data using Babelomics. This analysis entails performing quantile normalization and then detecting differentially expressed genes associated with the transgenesis of a human oncogene c-Myc in mice. Finally, hierarchical clustering is performed on the differentially expressed genes using the Cluster program, and the results are visualized using TreeView.

Rights and Permissions

Citation: Cold Spring Harb Protoc. 2016 Aug 29. doi: 10.1101/pdb.prot093112. Link to article on publisher's site

Related Resources

Link to Article in PubMed

PubMed ID

27574201